Dana K Howe

Summary

Affiliation: Oregon State University
Country: USA

Publications

  1. pmc Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution
    Dana K Howe
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, 97331, USA
    BMC Evol Biol 8:62. 2008
  2. pmc Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes
    Dee R Denver
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, OR, USA
    Genome Biol Evol 4:513-22. 2012
  3. pmc Selfish little circles: transmission bias and evolution of large deletion-bearing mitochondrial DNA in Caenorhabditis briggsae nematodes
    Katie A Clark
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America
    PLoS ONE 7:e41433. 2012
  4. pmc Evolution of Caenorhabditis mitochondrial genome pseudogenes and Caenorhabditis briggsae natural isolates
    Michael J Raboin
    Molecular and Cellular Biology Program, Oregon State University, OR, USA
    Mol Biol Evol 27:1087-96. 2010
  5. pmc Selective sweeps and parallel mutation in the adaptive recovery from deleterious mutation in Caenorhabditis elegans
    Dee R Denver
    Department of Zoology, Oregon State University, Corvallis, Oregon 97331, USA
    Genome Res 20:1663-71. 2010
  6. pmc Using mitogenomic and nuclear ribosomal sequence data to investigate the phylogeny of the Xiphinema americanum species complex
    Inga A Zasada
    USDA ARS Horticultural Crops Research Laboratory, Corvallis, Oregon, United States of America
    PLoS ONE 9:e90035. 2014
  7. pmc A genome-wide view of Caenorhabditis elegans base-substitution mutation processes
    Dee R Denver
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA
    Proc Natl Acad Sci U S A 106:16310-4. 2009
  8. pmc High Rate of Large Deletions in Caenorhabditis briggsae Mitochondrial Genome Mutation Processes
    Dana K Howe
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University
    Genome Biol Evol 2010:29-38. 2010

Collaborators

Detail Information

Publications8

  1. pmc Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution
    Dana K Howe
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, 97331, USA
    BMC Evol Biol 8:62. 2008
    ..Evidence for Muller's Ratchet and knowledge on its underlying molecular mechanisms, however, are lacking for natural populations...
  2. pmc Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes
    Dee R Denver
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, OR, USA
    Genome Biol Evol 4:513-22. 2012
    ..Our findings show that base-substitution mutation processes in these closely related animal lineages are mostly stable but differ from natural polymorphism patterns in these two species...
  3. pmc Selfish little circles: transmission bias and evolution of large deletion-bearing mitochondrial DNA in Caenorhabditis briggsae nematodes
    Katie A Clark
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America
    PLoS ONE 7:e41433. 2012
    ..briggsae, offering a powerful new system to study selfish mtDNA dynamics in metazoans...
  4. pmc Evolution of Caenorhabditis mitochondrial genome pseudogenes and Caenorhabditis briggsae natural isolates
    Michael J Raboin
    Molecular and Cellular Biology Program, Oregon State University, OR, USA
    Mol Biol Evol 27:1087-96. 2010
    ..Our findings provide new insights into the mode and tempo of mitochondrial genome and pseudogene evolution both within and between Caenorhabditis nematode species...
  5. pmc Selective sweeps and parallel mutation in the adaptive recovery from deleterious mutation in Caenorhabditis elegans
    Dee R Denver
    Department of Zoology, Oregon State University, Corvallis, Oregon 97331, USA
    Genome Res 20:1663-71. 2010
    ..Our study suggests that recovery-line mutations identified in both coding and noncoding genomic regions might have beneficial effects associated with compensatory epistatic interactions...
  6. pmc Using mitogenomic and nuclear ribosomal sequence data to investigate the phylogeny of the Xiphinema americanum species complex
    Inga A Zasada
    USDA ARS Horticultural Crops Research Laboratory, Corvallis, Oregon, United States of America
    PLoS ONE 9:e90035. 2014
    ..The inherent heterogeneity in ITS1 rDNA sequence data and lack of informative sites in 18S rDNA analysis suggests that mtDNA may be more useful in sorting out the taxonomic confusion of the X. americanum species complex. ..
  7. pmc A genome-wide view of Caenorhabditis elegans base-substitution mutation processes
    Dee R Denver
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA
    Proc Natl Acad Sci U S A 106:16310-4. 2009
    ..elegans and many other animal species; this observation challenges the assumption that natural patterns of molecular variation in noncoding regions of the nuclear genome accurately reflect underlying mutation processes...
  8. pmc High Rate of Large Deletions in Caenorhabditis briggsae Mitochondrial Genome Mutation Processes
    Dana K Howe
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University
    Genome Biol Evol 2010:29-38. 2010
    ..elegans as compared with C. briggsae. Our results show that C. briggsae mtDNA is highly susceptible to large deletions and that the mitochondrial mutation process varies between Caenorhabditis nematode species...