Amy M Brunner

Summary

Affiliation: Oregon State University
Country: USA

Publications

  1. ncbi request reprint Poplar genome sequence: functional genomics in an ecologically dominant plant species
    Amy M Brunner
    Department of Forest Science, Oregon State University, Corvallis, OR 97331 5752, USA
    Trends Plant Sci 9:49-56. 2004
  2. pmc Validating internal controls for quantitative plant gene expression studies
    Amy M Brunner
    Department of Forest Science, Oregon State University, Corvallis, OR 97331 5752, USA
    BMC Plant Biol 4:14. 2004
  3. ncbi request reprint Populus CEN/TFL1 regulates first onset of flowering, axillary meristem identity and dormancy release in Populus
    Rozi Mohamed
    Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331 5752, USA
    Plant J 62:674-88. 2010
  4. pmc Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa
    Palitha Dharmawardhana
    Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331 5752, USA
    BMC Genomics 11:150. 2010
  5. doi request reprint Stability of transgenes in trees: expression of two reporter genes in poplar over three field seasons
    Jingyi Li
    Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331 5752, USA
    Tree Physiol 29:299-312. 2009
  6. ncbi request reprint Matrix attachment region elements have small and variable effects on transgene expression and stability in field-grown Populus
    Jingyi Li
    Department of Forest Science, Oregon State University, Corvallis, OR 97331 5752, USA
    Plant Biotechnol J 6:887-96. 2008
  7. ncbi request reprint Efficient and stable transgene suppression via RNAi in field-grown poplars
    Jingyi Li
    Department of Forest Science, Oregon State University, Corvallis, OR 97331 5752, USA
    Transgenic Res 17:679-94. 2008
  8. ncbi request reprint Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    Plant Biotechnol J 5:615-26. 2007
  9. ncbi request reprint Transgenic sterility in Populus: expression properties of the poplar PTLF, Agrobacterium NOS and two minimal 35S promoters in vegetative tissues
    Hao Wei
    Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331 5752, USA
    Tree Physiol 26:401-10. 2006
  10. ncbi request reprint An evolving approach to understanding plant adaptation
    Glenn T Howe
    Department of Forest Science, Oregon State University, Corvallis, OR 973315751, USA
    New Phytol 167:1-5. 2005

Collaborators

Detail Information

Publications15

  1. ncbi request reprint Poplar genome sequence: functional genomics in an ecologically dominant plant species
    Amy M Brunner
    Department of Forest Science, Oregon State University, Corvallis, OR 97331 5752, USA
    Trends Plant Sci 9:49-56. 2004
    ....
  2. pmc Validating internal controls for quantitative plant gene expression studies
    Amy M Brunner
    Department of Forest Science, Oregon State University, Corvallis, OR 97331 5752, USA
    BMC Plant Biol 4:14. 2004
    ..Studies rarely verify that gene expression levels for reference genes are adequately consistent among the samples used, nor compare alternative genes to assess which are most reliable for the experimental conditions analyzed...
  3. ncbi request reprint Populus CEN/TFL1 regulates first onset of flowering, axillary meristem identity and dormancy release in Populus
    Rozi Mohamed
    Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331 5752, USA
    Plant J 62:674-88. 2010
    ..Considered together, these results indicate that PopCEN1/PopCEN2 help to integrate shoot developmental transitions that recur during each seasonal cycle with the age-related changes that occur over years of growth...
  4. pmc Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa
    Palitha Dharmawardhana
    Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331 5752, USA
    BMC Genomics 11:150. 2010
    ..The terminal region of the developing shoot provides a steep developmental gradient from primary to secondary growth that facilitates identification of genes that play specialized functions during each of these phases of growth...
  5. doi request reprint Stability of transgenes in trees: expression of two reporter genes in poplar over three field seasons
    Jingyi Li
    Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331 5752, USA
    Tree Physiol 29:299-312. 2009
    ..Use of the poplar rbcS promoter, which drove BAR in the transgenic constructs, had no adverse effect on transgene expression levels or stability compared with the heterologous CaMV 35S promoter, which directed GFP expression...
  6. ncbi request reprint Matrix attachment region elements have small and variable effects on transgene expression and stability in field-grown Populus
    Jingyi Li
    Department of Forest Science, Oregon State University, Corvallis, OR 97331 5752, USA
    Plant Biotechnol J 6:887-96. 2008
    ..The presence of MARs had no effect on the transgene copy number, but was positively associated with T-DNA truncations, as well as with the formation of direct over inverted repeats at the same chromosomal locus...
  7. ncbi request reprint Efficient and stable transgene suppression via RNAi in field-grown poplars
    Jingyi Li
    Department of Forest Science, Oregon State University, Corvallis, OR 97331 5752, USA
    Transgenic Res 17:679-94. 2008
    ..Our results suggest that RNAi can be highly effective for functional genomics and biotechnology of perennial plants...
  8. ncbi request reprint Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    Plant Biotechnol J 5:615-26. 2007
    ..Both hIR and transitive methods are useful tools in plant biotechnology and genomics. The choice of vector will depend on specific objectives such as cloning throughput, number of events and degree of suppression required...
  9. ncbi request reprint Transgenic sterility in Populus: expression properties of the poplar PTLF, Agrobacterium NOS and two minimal 35S promoters in vegetative tissues
    Hao Wei
    Department of Forest Science, Oregon State University, 321 Richardson Hall, Corvallis, OR 97331 5752, USA
    Tree Physiol 26:401-10. 2006
    ..The NOS promoter appears best suited to counteract vegetative expression of a cytotoxin driven by the PTLF promoter where 1:1 toxin:attenuator expression is required...
  10. ncbi request reprint An evolving approach to understanding plant adaptation
    Glenn T Howe
    Department of Forest Science, Oregon State University, Corvallis, OR 973315751, USA
    New Phytol 167:1-5. 2005
  11. pmc A Populus EST resource for plant functional genomics
    Fredrik Sterky
    Department of Biotechnology, Kungliga Tekniska Högskolan Royal Institute of Technology, AlbaNova University Center, SE 106 91 Stockholm, Sweden
    Proc Natl Acad Sci U S A 101:13951-6. 2004
    ..These data will also valuable for functional genomic efforts in Arabidopsis...
  12. ncbi request reprint CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees
    Henrik Böhlenius
    Umea Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, S 90183 Umeå, Sweden
    Science 312:1040-3. 2006
    ..This regulatory mechanism can explain the ecogenetic variation in a highly adaptive trait: the critical daylength for growth cessation displayed by aspen trees sampled across a latitudinal gradient spanning northern Europe...
  13. pmc Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa
    Udaya C Kalluri
    Environmental Sciences Division, Oak Ridge National Laboratory, PO Box 2008, Oak Ridge, TN 37831, USA
    BMC Plant Biol 7:59. 2007
    ..We identified the suites of genes in the two gene families in Populus and performed comparative genomic analysis with Arabidopsis and rice...
  14. doi request reprint Genes for control of plant stature and form
    Victor B Busov
    Michigan Technological University, School of Forest Research and Environmental Science, 101 Noblet Hall, 1400 Townsend Drive, Houghton, MI 49931, USA
    New Phytol 177:589-607. 2008
    ..There are considerable opportunities for comparative and translational genomics in nonmodel plant systems...
  15. ncbi request reprint Genetic transformation: a powerful tool for dissection of adaptive traits in trees
    Victor B Busov
    Michigan Technological University, School of Forest Resources and Environmental Science, Houghton, MI 49931, USA
    New Phytol 167:9-18. 2005
    ....