Klaus Ecker

Summary

Affiliation: Ohio University
Country: USA

Publications

  1. doi request reprint A concept for ab initio prediction of cis-regulatory modules
    K Ecker
    Russ College of Engineering and Technology, Ohio University, Athens, OH, USA
    In Silico Biol 9:285-306. 2009
  2. ncbi request reprint The SiteSeeker motif discovery tool
    Klaus Ecker
    Russ College of Engineering and Technology, Ohio University Athens, Ohio, USA
    In Silico Biol 9:11-22. 2009
  3. pmc The word landscape of the non-coding segments of the Arabidopsis thaliana genome
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, OH, USA
    BMC Genomics 10:463. 2009
  4. pmc WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures
    Jens Lichtenberg
    Bioinformatics Laboratory, School of EECS, Ohio University, Athens, Ohio 45701, USA
    BMC Bioinformatics 11:S6. 2010
  5. pmc Word-based characterization of promoters involved in human DNA repair pathways
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, Ohio, USA
    BMC Genomics 10:S18. 2009

Detail Information

Publications5

  1. doi request reprint A concept for ab initio prediction of cis-regulatory modules
    K Ecker
    Russ College of Engineering and Technology, Ohio University, Athens, OH, USA
    In Silico Biol 9:285-306. 2009
    ..The results are compared to that of random sequences, and it is shown that a clear decision about co-regulation is possible at this level...
  2. ncbi request reprint The SiteSeeker motif discovery tool
    Klaus Ecker
    Russ College of Engineering and Technology, Ohio University Athens, Ohio, USA
    In Silico Biol 9:11-22. 2009
    ..A set of At promoters were used as a benchmark for a comparative test against five known tools. It could be verified that SiteSeeker significantly outperformed these tools...
  3. pmc The word landscape of the non-coding segments of the Arabidopsis thaliana genome
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, OH, USA
    BMC Genomics 10:463. 2009
    ..The frequencies and positional distributions of these words within particular non-coding genomic segments provide important insights into how the words function in processes such as mRNA stability and regulation of gene expression...
  4. pmc WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures
    Jens Lichtenberg
    Bioinformatics Laboratory, School of EECS, Ohio University, Athens, Ohio 45701, USA
    BMC Bioinformatics 11:S6. 2010
    ..Although a number of methods have been developed for motif discovery, most of them lack the scalability needed to analyze large genomic data sets...
  5. pmc Word-based characterization of promoters involved in human DNA repair pathways
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, Ohio, USA
    BMC Genomics 10:S18. 2009
    ....