Klaus Ecker

Summary

Affiliation: Ohio University
Country: USA

Publications

  1. ncbi A concept for ab initio prediction of cis-regulatory modules
    K Ecker
    Russ College of Engineering and Technology, Ohio University, Athens, OH, USA
    In Silico Biol 9:285-306. 2009
  2. ncbi The SiteSeeker motif discovery tool
    Klaus Ecker
    Russ College of Engineering and Technology, Ohio University Athens, Ohio, USA
    In Silico Biol 9:11-22. 2009
  3. ncbi The word landscape of the non-coding segments of the Arabidopsis thaliana genome
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, OH, USA
    BMC Genomics 10:463. 2009
  4. ncbi WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures
    Jens Lichtenberg
    Bioinformatics Laboratory, School of EECS, Ohio University, Athens, Ohio 45701, USA
    BMC Bioinformatics 11:S6. 2010
  5. ncbi Word-based characterization of promoters involved in human DNA repair pathways
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, Ohio, USA
    BMC Genomics 10:S18. 2009

Detail Information

Publications5

  1. ncbi A concept for ab initio prediction of cis-regulatory modules
    K Ecker
    Russ College of Engineering and Technology, Ohio University, Athens, OH, USA
    In Silico Biol 9:285-306. 2009
    ..The results are compared to that of random sequences, and it is shown that a clear decision about co-regulation is possible at this level...
  2. ncbi The SiteSeeker motif discovery tool
    Klaus Ecker
    Russ College of Engineering and Technology, Ohio University Athens, Ohio, USA
    In Silico Biol 9:11-22. 2009
    ..A set of At promoters were used as a benchmark for a comparative test against five known tools. It could be verified that SiteSeeker significantly outperformed these tools...
  3. ncbi The word landscape of the non-coding segments of the Arabidopsis thaliana genome
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, OH, USA
    BMC Genomics 10:463. 2009
    ..The frequencies and positional distributions of these words within particular non-coding genomic segments provide important insights into how the words function in processes such as mRNA stability and regulation of gene expression...
  4. ncbi WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures
    Jens Lichtenberg
    Bioinformatics Laboratory, School of EECS, Ohio University, Athens, Ohio 45701, USA
    BMC Bioinformatics 11:S6. 2010
    ..Although a number of methods have been developed for motif discovery, most of them lack the scalability needed to analyze large genomic data sets...
  5. ncbi Word-based characterization of promoters involved in human DNA repair pathways
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, Ohio, USA
    BMC Genomics 10:S18. 2009
    ....