John E McCormack

Summary

Affiliation: Occidental College
Country: USA

Publications

  1. pmc Speciation in Western Scrub-Jays, Haldane's rule, and genetic clines in secondary contact
    Fiona C Gowen
    Moore Laboratory of Zoology, Occidental College, Los Angeles, CA, USA
    BMC Evol Biol 14:135. 2014
  2. pmc A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing
    John E McCormack
    Museum of Natural Science, Louisiana State University, Baton Rouge, Louisiana, USA
    PLoS ONE 8:e54848. 2013
  3. doi request reprint Applications of next-generation sequencing to phylogeography and phylogenetics
    John E McCormack
    Museum of Natural Science, Louisiana State University, Baton Rouge, LA 70803, United States
    Mol Phylogenet Evol 66:526-38. 2013
  4. pmc Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes
    John A St John
    Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA
    Genome Biol 13:415. 2012
  5. pmc Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
    John E McCormack
    Museum of Natural Science, Louisiana State University, Baton Rouge, Louisiana 70803, USA
    Genome Res 22:746-54. 2012
  6. doi request reprint Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences
    John E McCormack
    Museum of Natural Science, Louisiana State University, Baton Rouge, LA 70803, USA
    Mol Phylogenet Evol 62:397-406. 2012
  7. doi request reprint Landscape genetics of California mule deer (Odocoileus hemionus): the roles of ecological and historical factors in generating differentiation
    Katherine M Pease
    Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA
    Mol Ecol 18:1848-62. 2009
  8. doi request reprint Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales
    Brant C Faircloth
    Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA
    Syst Biol 61:717-26. 2012
  9. pmc Integrating paleoecology and genetics of bird populations in two sky island archipelagos
    John E McCormack
    Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Charles E Young Drive South, Los Angeles, CA 90095, USA
    BMC Biol 6:28. 2008
  10. pmc Niche expansion leads to small-scale adaptive divergence along an elevation gradient in a medium-sized passerine bird
    John E McCormack
    Center for Tropical Research, Institute of the Environment, University of California, Los Angeles, CA 90095, USA
    Proc Biol Sci 275:2155-64. 2008

Collaborators

  • Robb T Brumfield
  • Travis C Glenn
  • Nicholas G Crawford
  • James M Maley
  • Patricia Adair Gowaty
  • Elizabeth P Derryberry
  • Adam H Freedman
  • Gary R Graves
  • John P Pollinger
  • A Townsend Peterson
  • Bryan C Carstens
  • Brant C Faircloth
  • Fiona C Gowen
  • John A St John
  • Katherine M Pease
  • Carla Cicero
  • T Caleb Warr
  • Miryam Venegas-Anaya
  • Brian J Raney
  • Jason T Howard
  • Sally R Isberg
  • Shane C Burgess
  • Edward L Braun
  • Louis J Guillette
  • Carl J Schmidt
  • Taisen Iguchi
  • David A Ray
  • Daniel G Peterson
  • Lee G Miles
  • Federico G Hoffmann
  • Mark E Merchant
  • Llewellyn D Densmore
  • Jeremy R Sanford
  • Richard E Green
  • Fiona M McCarthy
  • Stacey L Lance
  • Matthew K Fujita
  • Eric W Triplett
  • Amanda M Cooksey
  • Jonathan M Howard
  • Tracey D Tuberville
  • Jaime Gongora
  • Scott V Edwards
  • Bertrand Bed'hom
  • Kyria A Roessler
  • Michael G Harvey
  • Amanda Y Chong
  • David D Pollock
  • Nader Pourmand
  • Matthew J Greenwold
  • Erich D Jarvis
  • Pauline Dalzell
  • Jennifer C Drew
  • ARKHAT ABZHANOV
  • Todd A Castoe
  • Ap Jason de Koning
  • DANIEL E JANES
  • Shahid Yar Khan
  • Christopher Moran
  • Satomi Kohno
  • Roger H Sawyer
  • Wolfgang Buermann
  • Ken Jones
  • Jim Banks
  • Robert K Wayne
  • Robert J Schaefer
  • Erin Meredith
  • Vernon C Bleich
  • Jeff Rodzen

Detail Information

Publications10

  1. pmc Speciation in Western Scrub-Jays, Haldane's rule, and genetic clines in secondary contact
    Fiona C Gowen
    Moore Laboratory of Zoology, Occidental College, Los Angeles, CA, USA
    BMC Evol Biol 14:135. 2014
    ....
  2. pmc A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing
    John E McCormack
    Museum of Natural Science, Louisiana State University, Baton Rouge, Louisiana, USA
    PLoS ONE 8:e54848. 2013
    ....
  3. doi request reprint Applications of next-generation sequencing to phylogeography and phylogenetics
    John E McCormack
    Museum of Natural Science, Louisiana State University, Baton Rouge, LA 70803, United States
    Mol Phylogenet Evol 66:526-38. 2013
    ....
  4. pmc Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes
    John A St John
    Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA
    Genome Biol 13:415. 2012
    ..The status of these projects and our planned analyses are described...
  5. pmc Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
    John E McCormack
    Museum of Natural Science, Louisiana State University, Baton Rouge, Louisiana 70803, USA
    Genome Res 22:746-54. 2012
    ..One of the most remarkable findings of our study is that ultraconserved elements and their flanking DNA are a rich source of phylogenetic information with strong potential for application across Amniotes...
  6. doi request reprint Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences
    John E McCormack
    Museum of Natural Science, Louisiana State University, Baton Rouge, LA 70803, USA
    Mol Phylogenet Evol 62:397-406. 2012
    ..We discuss improvements that should enhance the method's utility for primary data generation...
  7. doi request reprint Landscape genetics of California mule deer (Odocoileus hemionus): the roles of ecological and historical factors in generating differentiation
    Katherine M Pease
    Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA
    Mol Ecol 18:1848-62. 2009
    ..Geographic differences in the timing of reproduction and peak vegetation as well as habitat choice reflecting natal origin may explain the persistence of genetic subdivision...
  8. doi request reprint Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales
    Brant C Faircloth
    Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA
    Syst Biol 61:717-26. 2012
    ..Because many organismal lineages have UCEs, this type of genetic marker and the analytical framework we outline can be applied across the tree of life, potentially reshaping our understanding of phylogeny at many taxonomic levels...
  9. pmc Integrating paleoecology and genetics of bird populations in two sky island archipelagos
    John E McCormack
    Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Charles E Young Drive South, Los Angeles, CA 90095, USA
    BMC Biol 6:28. 2008
    ..We also predicted that divergence times estimated from corrected genetic distance and a coalescence model would post-date the last glacial maximum...
  10. pmc Niche expansion leads to small-scale adaptive divergence along an elevation gradient in a medium-sized passerine bird
    John E McCormack
    Center for Tropical Research, Institute of the Environment, University of California, Los Angeles, CA 90095, USA
    Proc Biol Sci 275:2155-64. 2008
    ..These results demonstrate that niche expansion can lead to adaptive divergence despite gene flow between parapatric populations along an elevation gradient, providing information on a key precursor to ecological speciation...