Hongmei Jiang

Summary

Affiliation: Northwestern University
Country: USA

Publications

  1. pmc A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads
    Hongmei Jiang
    Department of Statistics, Northwestern University, Evanston, Illinois, United States of America
    PLoS ONE 7:e46450. 2012
  2. ncbi request reprint A two-step multiple comparison procedure for a large number of tests and multiple treatments
    Hongmei Jiang
    Northwestern University, USA
    Stat Appl Genet Mol Biol 5:Article28. 2006
  3. ncbi request reprint A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays
    Chia Ju Lee
    Computational Biology and Bioinformatics Program, Northwestemrn University, Evanston, IL 60208, USA
    Int J Comput Biol Drug Des 1:396-405. 2008
  4. pmc Genome-wide study of DNA methylation alterations in response to diazinon exposure in vitro
    Xiao Zhang
    Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA
    Environ Toxicol Pharmacol 34:959-68. 2012
  5. ncbi request reprint Transfer of T-DNA and Vir proteins to plant cells by Agrobacterium tumefaciens induces expression of host genes involved in mediating transformation and suppresses host defense gene expression
    - Veena
    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907 1392, USA
    Plant J 35:219-36. 2003
  6. pmc Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development
    Lu Tian
    Intercollegiate Programs in Genetics and Department of Soil and Crop Sciences, Texas A and M University, College Station, Texas 77843 2474, USA
    Genetics 169:337-45. 2005
  7. pmc Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
    Jianlin Wang
    Department of Agronomy, University of Wisconsin, Madison, Wisconsin 53706, USA
    Genetics 172:507-17. 2006

Collaborators

Detail Information

Publications7

  1. pmc A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads
    Hongmei Jiang
    Department of Statistics, Northwestern University, Evanston, Illinois, United States of America
    PLoS ONE 7:e46450. 2012
    ..It assigns reads to the low taxonomic ranks very accurately. Our statistical approach of taxonomic assignment of metagenomic reads, TAMER, is implemented in R and available at http://faculty.wcas.northwestern.edu/hji403/MetaR.htm...
  2. ncbi request reprint A two-step multiple comparison procedure for a large number of tests and multiple treatments
    Hongmei Jiang
    Northwestern University, USA
    Stat Appl Genet Mol Biol 5:Article28. 2006
    ..When compared via simulation the two-step approach has increased power over a one-step procedure, and controls the FDR at a desire significance level...
  3. ncbi request reprint A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays
    Chia Ju Lee
    Computational Biology and Bioinformatics Program, Northwestemrn University, Evanston, IL 60208, USA
    Int J Comput Biol Drug Des 1:396-405. 2008
    ..In addition to the performance improvement, the general divide-and-conquer strategy can be applied to any other normalisation algorithms without modifying the underlying implementation...
  4. pmc Genome-wide study of DNA methylation alterations in response to diazinon exposure in vitro
    Xiao Zhang
    Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA
    Environ Toxicol Pharmacol 34:959-68. 2012
    ..2-fold, q-value=0.002), and some remain functionally unknown. Our results provided direct experimental evidence that diazinon may modify gene promoter DNA methylation levels, which may play a pathological role in cancer development...
  5. ncbi request reprint Transfer of T-DNA and Vir proteins to plant cells by Agrobacterium tumefaciens induces expression of host genes involved in mediating transformation and suppresses host defense gene expression
    - Veena
    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907 1392, USA
    Plant J 35:219-36. 2003
    ..A comparison of plant responses to different strains of Agrobacterium indicates that transfer of both T-DNA and Vir proteins modulates the expression of host genes during the transformation process...
  6. pmc Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development
    Lu Tian
    Intercollegiate Programs in Genetics and Department of Soil and Crop Sciences, Texas A and M University, College Station, Texas 77843 2474, USA
    Genetics 169:337-45. 2005
    ....
  7. pmc Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
    Jianlin Wang
    Department of Agronomy, University of Wisconsin, Madison, Wisconsin 53706, USA
    Genetics 172:507-17. 2006
    ....