Research Topics
| R AlladaSummaryAffiliation: Northwestern University Country: USA Publications
Research Grants
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Detail Information
Publications
Stopping time: the genetics of fly and mouse circadian clocksR Allada
Department of Neurobiology, Evanston, IL 60208, USA
Annu Rev Neurosci 24:1091-119. 2001..Future studies of pacemaker mechanisms and their control of physiology and behavior will likely continue to rely on forward genetics...
Circadian organization of behavior and physiology in DrosophilaRavi Allada
Department of Neurobiology and Physiology, Northwestern University, Evanston, IL 60208, USA
Annu Rev Physiol 72:605-24. 2010..These studies reveal a remarkable complexity to circadian pathways in this "simple" model organism...
Casein kinase 2, circadian clocks, and the flight from mutagenic lightRavi Allada
Department of Neurobiology and Physiology, Northwestern University, Evanston, IL 60208, USA
Mol Cell Biochem 274:141-9. 2005..The finding of a dual function of CK2 in clocks and in UV responses supports the notion that clocks evolved to assist organisms in avoiding the mutagenic effects of daily sunlight...
Unearthing the phylogenetic roots of sleepRavi Allada
Department of Neurobiology and Physiology, Northwestern University, 2205 Tech Dr, 2 160, Evanston, Illinois 60208, USA
Curr Biol 18:R670-R679. 2008..Taken together, these studies suggest an ancient origin for sleep and raise the possibility that model organism genetics may reveal the molecular mechanisms that guide sleep and wake...
How flies time when they're having brunchRavi Allada
Department of Neurobiology and Physiology, Northwestern University, 2205 Tech Drive, 2 160, Evanston, IL 60201, USA
Cell Metab 8:279-80. 2008..In this issue of Cell Metabolism, Xu et al. (2008) explore the fruit fly as a model system to examine the links between clocks, feeding, and metabolism...
A role for casein kinase 2alpha in the Drosophila circadian clockJui Ming Lin
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois 60208, USA
Nature 420:816-20. 2002..These effects are probably direct, as CK2alpha specifically phosphorylates Per in vitro. We propose that CK2 is an evolutionary link between the divergent circadian systems of animals, plants and fungi...
TIMELESS is an important mediator of CK2 effects on circadian clock function in vivoRose Anne Meissner
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois 60208, USA
J Neurosci 28:9732-40. 2008..The period lengthening effects in Tik heterozygotes are reduced in a tim(UL) mutant that disrupts a putative CK2 phosphorylation site. Together, these data indicate that TIM is an important mediator of CK2 effects on circadian rhythms...
The GABA(A) receptor RDL acts in peptidergic PDF neurons to promote sleep in DrosophilaBrian Y Chung
Department of Neurobiology and Physiology, Northwestern University, Evanston, IL 60208, USA
Curr Biol 19:386-90. 2009..In addition, RDL is detectable most strongly on the large subset of PDF+ pacemaker neurons. These results suggest that GABAergic inhibition of arousal-promoting PDF neurons is an important mode of sleep-wake regulation in vivo...
Perturbing dynamin reveals potent effects on the Drosophila circadian clockValerie L Kilman
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois, United States of America
PLoS ONE 4:e5235. 2009..To address this question, we expressed a temperature-sensitive, dominant negative allele of the fly homolog of dynamin called shibire(ts1) (shi(ts1)), an active component in membrane vesicle scission...
Genetic analysis of ectopic circadian clock induction in DrosophilaValerie L Kilman
Department of Neurobiology and Physiology, Center for Sleep and Circadian Biology, Northwestern University, Evanston, Illinois 60208, USA
J Biol Rhythms 24:368-78. 2009..While other factors may contribute, these results indicate that persistent Clock induction is uniquely capable of broadly inducing ectopic rhythms even in adults, consistent with a special role at the top of a clock gene hierarchy...
Clockwork orange encodes a transcriptional repressor important for circadian-clock amplitude in DrosophilaChunghun Lim
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois 60208, USA
Curr Biol 17:1082-9. 2007..Molecular analysis suggests that CWO acts, in part, by repressing CLK target genes. We propose that CWO acts as a transcriptional and behavioral rhythm amplifier...
A dynamic role for the mushroom bodies in promoting sleep in DrosophilaJena L Pitman
Department of Neurobiology and Physiology, Northwestern University, Evanston, Ilinois 60208, USA
Nature 441:753-6. 2006..Chemical ablation of the mushroom bodies also resulted in reduced sleep. These studies highlight a central role for the mushroom bodies in sleep regulation...
A G protein-coupled receptor, groom-of-PDF, is required for PDF neuron action in circadian behaviorBridget C Lear
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois 60208, USA
Neuron 48:221-7. 2005..gop is expressed most strongly in the dorsal brain in regions that lie in proximity to PDF-containing nerve terminals. Taken together, these studies implicate GOP as a PDF receptor in Drosophila...
The ion channel narrow abdomen is critical for neural output of the Drosophila circadian pacemakerBridget C Lear
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois 60208, USA
Neuron 48:965-76. 2005..In na mutants, expression of potassium currents and the key neuropeptide PDF are elevated, the latter consistent with reduced release. These data implicate NA and the pacemaker neural network in controlling phase and rhythmicity...
Circadian clocks: a tale of two feedback loopsRavi Allada
Department of Neurobiology and Physiology, Northwestern University, Evanston, IL 60208, USA
Cell 112:284-6. 2003..In Drosophila, the first loop has been well characterized and controls rhythmic period expression. In this issue of Cell, define a role for a transcriptional activator and a repressor in the second feedback loop...
In vivo circadian function of casein kinase 2 phosphorylation sites in Drosophila PERIODJui Ming Lin
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois 60208, USA
J Neurosci 25:11175-83. 2005..In many respects, mutation of these phosphorylation sites phenocopies mutation of the catalytic subunit of CK2. We propose that CK2 phosphorylation at these sites triggers PER nuclear localization...
The CRYPTOCHROME photoreceptor gates PDF neuropeptide signaling to set circadian network hierarchy in DrosophilaLuoying Zhang
Department of Neurobiology and Physiology, Northwestern University, Evanston, IL 60208, USA
Curr Biol 19:2050-5. 2009..On the basis of our findings, we propose that CRY can gate PDF signaling to determine behavioral phase and network hierarchy...
The neuropeptide PDF acts directly on evening pacemaker neurons to regulate multiple features of circadian behaviorBridget C Lear
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois, USA
PLoS Biol 7:e1000154. 2009..These studies define a key direct output circuit sufficient for multiple PDF dependent behaviors...
DN1(p) circadian neurons coordinate acute light and PDF inputs to produce robust daily behavior in DrosophilaLuoying Zhang
Department of Neurobiology and Physiology, Northwestern University, Evanston, IL 60208, USA
Curr Biol 20:591-9. 2010..The fruit fly Drosophila exhibits clock-driven activity increases that anticipate dawn and dusk and free-running rhythms under constant conditions. Flies also respond to the onset of light and dark with acute increases in activity...
Dominant-negative CK2alpha induces potent effects on circadian rhythmicityElaine M Smith
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois, United States of America
PLoS Genet 4:e12. 2008..Taken together, these in vivo data implicate a central role of CK2alpha function in timing PER negative feedback in adult circadian neurons...
Meta-analysis of Drosophila circadian microarray studies identifies a novel set of rhythmically expressed genesKevin P Keegan
Department of Neurobiology and Physiology, Northwestern University, Evanston, Illinois, United States of America
PLoS Comput Biol 3:e208. 2007....
Two oscillators are better than one: a circadian pacemaker escapes from the lightRavi Allada
Department of Neurobiology and Physiology, Northwestern University, Evanston, IL 60208, USA
Neuron 53:621-3. 2007..demonstrate that, under certain genetic conditions, a novel cluster of pacemaker neurons can drive rhythmic behavior in constant light. Surprisingly, these neurons are distinct from those thought to drive rhythms in constant darkness...
An emerging link between general anesthesia and sleepRavi Allada
Department of Neurobiology and Physiology, Center for Sleep and Circadian Biology, Northwestern University, 2205 Tech Drive, 2-160, Evanston, IL 60208, USA
Proc Natl Acad Sci U S A 105:2257-8. 2008
Liver has rhythmFred W Turek
Center for Sleep and Circadian Biology, Northwestern University, Evanston, IL 60208-3520, USA
Hepatology 35:743-5. 2002
Drosophila CK2 phosphorylates Hairy and regulates its activity in vivoBhaskar Kahali
Department of Biology, West Virginia University, 4220 Life Sciences Building, 53 Campus Drive, Morgantown, WV 26506, USA
Biochem Biophys Res Commun 373:637-42. 2008..Together, these studies suggest that CK2 contributes to repression by Hairy...
Drosophila clock can generate ectopic circadian clocksJie Zhao
Howard Hughes Medical Institute, Department of Biology, Brandeis University, Waltham, MA 02454, USA
Cell 113:755-66. 2003..We propose that Clock is uniquely able to induce and organize the core elements of interdependent feedback loops necessary for circadian rhythms...
A recessive mutant of Drosophila Clock reveals a role in circadian rhythm amplitudeRavi Allada
Howard Hughes Medical Institute and Department of Biology, Brandeis University, Waltham, MA 02454, USA
EMBO J 22:3367-75. 2003..Taken together with other data, we propose that Clk makes a major contribution to the strength and amplitude of circadian rhythms...
Circadian rhythms in DrosophilaMichael Rosbash
Howard Hughes Medical Institute, Department of Biology, Brandeis University, Waltham, MA 02454, USA
Novartis Found Symp 253:223-32; discussion 52-5, 102-9, 232-7 passim. 2003..Results with the new recessive allele not only support the notion that Clock is an important clock gene but also indicate that it contributes more to the amplitude of the rhythm rather than the period...
Drosophila CK2 regulates lateral-inhibition during eye and bristle developmentAnasua Bose
Department of Biology, Life Sciences Building, 53 Campus Drive, West Virginia University Morgantown, WV 26506, USA
Mech Dev 123:649-64. 2006..Candidates for this regulation are the E(spl) repressors, the terminal effectors of this pathway...
Research Grants
- Intercellular Signaling in the Circadian ClockRavi Allada; Fiscal Year: 2010..Given the potential conservation with humans, this work should provide insight into the mechanisms by which neuropeptides mediate normal and disrupted circadian rhythms in human disease. ..
- Function of the Novel Ion Channel narrow abdomen in Daily RhythmsRavi Allada; Fiscal Year: 2007..Given the conservation of clocks and NA, this proposal should illuminate human daily rhythms and their contribution to disease. ..
- Function of Casein Kinase 2 in the Circadian ClockRavi Allada; Fiscal Year: 2007..The discovery of a circadian function of CK2 in plants, animals, and fungi suggests these studies will be relevant to many biological systems, including humans. ..
