Reed A Cartwright

Summary

Affiliation: North Carolina State University
Country: USA

Publications

  1. pmc Logarithmic gap costs decrease alignment accuracy
    Reed A Cartwright
    Department of Genetics, University of Georgia, Athens, GA 30602 7223, USA
    BMC Bioinformatics 7:527. 2006
  2. ncbi request reprint Ngila: global pairwise alignments with logarithmic and affine gap costs
    Reed A Cartwright
    Department of Genetics, University of Georgia, Athens, GA 30602 7223, USA
    Bioinformatics 23:1427-8. 2007
  3. pmc Problems and solutions for estimating indel rates and length distributions
    Reed A Cartwright
    Department of Genetics, Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA
    Mol Biol Evol 26:473-80. 2009
  4. pmc Antagonism between local dispersal and self-incompatibility systems in a continuous plant population
    Reed A Cartwright
    Department of Genetics Bioinformatics Research Center North Carolina State University, Campus Box 7566, Raleigh, NC 27695 7566, USA
    Mol Ecol 18:2327-36. 2009
  5. ncbi request reprint DNA assembly with gaps (Dawg): simulating sequence evolution
    Reed A Cartwright
    Department of Genetics, University of Georgia, Athens, GA 30602 7223, USA
    Bioinformatics 21:iii31-8. 2005
  6. pmc Frequency-dependent selection with dominance: a window onto the behavior of the mean fitness
    Marjorie A Asmussen
    Department of Genetics, University of Georgia, Athens, Georgia 30602 7223, USA
    Genetics 167:499-512. 2004
  7. pmc History can matter: non-Markovian behavior of ancestral lineages
    Reed A Cartwright
    Department of Genetics, Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695 7566, USA
    Syst Biol 60:276-90. 2011

Collaborators

Detail Information

Publications7

  1. pmc Logarithmic gap costs decrease alignment accuracy
    Reed A Cartwright
    Department of Genetics, University of Georgia, Athens, GA 30602 7223, USA
    BMC Bioinformatics 7:527. 2006
    ....
  2. ncbi request reprint Ngila: global pairwise alignments with logarithmic and affine gap costs
    Reed A Cartwright
    Department of Genetics, University of Georgia, Athens, GA 30602 7223, USA
    Bioinformatics 23:1427-8. 2007
    ..Ngila is an application that will find the best alignment of a pair of sequences using log-affine gap costs, which are the most biologically realistic gap costs...
  3. pmc Problems and solutions for estimating indel rates and length distributions
    Reed A Cartwright
    Department of Genetics, Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA
    Mol Biol Evol 26:473-80. 2009
    ....
  4. pmc Antagonism between local dispersal and self-incompatibility systems in a continuous plant population
    Reed A Cartwright
    Department of Genetics Bioinformatics Research Center North Carolina State University, Campus Box 7566, Raleigh, NC 27695 7566, USA
    Mol Ecol 18:2327-36. 2009
    ..This suggests that the primary evolutionary impact of self-incompatibility systems may be to prevent selfing, and prevention of biparental inbreeding might be a beneficial side-effect...
  5. ncbi request reprint DNA assembly with gaps (Dawg): simulating sequence evolution
    Reed A Cartwright
    Department of Genetics, University of Georgia, Athens, GA 30602 7223, USA
    Bioinformatics 21:iii31-8. 2005
    ..Researchers have limited or non-existent options for simulations useful for studying the impact of insertions, deletions, and alignments on phylogenetic accuracy...
  6. pmc Frequency-dependent selection with dominance: a window onto the behavior of the mean fitness
    Marjorie A Asmussen
    Department of Genetics, University of Georgia, Athens, Georgia 30602 7223, USA
    Genetics 167:499-512. 2004
    ..Computer simulations with random initial conditions and fitnesses reveal that the potential decline in mean fitness is not negligible; on average a net decrease occurs 20% of the time and reduces the mean fitness by >17%...
  7. pmc History can matter: non-Markovian behavior of ancestral lineages
    Reed A Cartwright
    Department of Genetics, Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695 7566, USA
    Syst Biol 60:276-90. 2011
    ..As a result, we believe that increased attention needs to be devoted to the robustness of evolutionary inference procedures that rely upon the Markov assumption...