Gloria Coruzzi

Summary

Affiliation: New York University
Country: USA

Publications

  1. ncbi request reprint Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Elena A Vidal
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Santiago 8331010, Chile
    BMC Genomics 14:701. 2013
  2. pmc Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate
    Gabriel Krouk
    Department of Biology, New York University, Center for Genomics and Systems Biology, New York, NY 10003, USA
    Genome Biol 11:R123. 2010
  3. pmc Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis
    Rodrigo A Gutierrez
    Department of Biology, New York University, Washington Square East, New York, NY 10003, USA
    Genome Biol 8:R7. 2007
  4. pmc Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants
    Peter M Palenchar
    Department of Chemistry, Rutgers University, Camden, NJ 10003, USA
    Genome Biol 5:R91. 2004
  5. pmc Genome-wide investigation of light and carbon signaling interactions in Arabidopsis
    Karen E Thum
    Department of Biology, New York University, New York, NY 10003, USA
    Genome Biol 5:R10. 2004
  6. pmc An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis
    Karen E Thum
    Department of Biology, New York University, New York, NY, 10003, USA
    BMC Syst Biol 2:31. 2008
  7. pmc Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis
    Mariana Obertello
    Center for Genomics and Systems Biology, Department of Biology, New York University, 1009 Main Building, New York, NY 10003, USA
    BMC Syst Biol 4:111. 2010
  8. pmc A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule"
    Damion Nero
    Department of Biology, New York University, Center for Genomics and Systems Biology, New York 10003, USA
    BMC Syst Biol 3:59. 2009
  9. pmc EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes
    Eric D Brenner
    The New York Botanical Garden, 200th St and Kazimiroff, Bronx, NY 10458 5126, USA
    BMC Genomics 6:143. 2005
  10. pmc ESTimating plant phylogeny: lessons from partitioning
    Jose E B de la Torre
    Department of Biology, New York University, 100 Washington Sq East, New York, NY 10003, USA
    BMC Evol Biol 6:48. 2006

Collaborators

Detail Information

Publications27

  1. ncbi request reprint Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Elena A Vidal
    FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genetica Molecular y Microbiologia, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Santiago 8331010, Chile
    BMC Genomics 14:701. 2013
    ..Despite several genome-wide efforts to identify nitrate-regulated genes, no comprehensive study of the Arabidopsis root transcriptome under contrasting nitrate conditions has been carried out...
  2. pmc Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate
    Gabriel Krouk
    Department of Biology, New York University, Center for Genomics and Systems Biology, New York, NY 10003, USA
    Genome Biol 11:R123. 2010
    ..Nitrate, acting as both a nitrogen source and a signaling molecule, controls many aspects of plant development. However, gene networks involved in plant adaptation to fluctuating nitrate environments have not yet been identified...
  3. pmc Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis
    Rodrigo A Gutierrez
    Department of Biology, New York University, Washington Square East, New York, NY 10003, USA
    Genome Biol 8:R7. 2007
    ..Carbon (C) and nitrogen (N) metabolites can regulate gene expression in Arabidopsis thaliana. Here, we use multi-network analysis of microarray data to identify molecular networks regulated by C and N in the Arabidopsis root system...
  4. pmc Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants
    Peter M Palenchar
    Department of Chemistry, Rutgers University, Camden, NJ 10003, USA
    Genome Biol 5:R91. 2004
    ....
  5. pmc Genome-wide investigation of light and carbon signaling interactions in Arabidopsis
    Karen E Thum
    Department of Biology, New York University, New York, NY 10003, USA
    Genome Biol 5:R10. 2004
    ..Light and carbon are two essential signals influencing plant growth and development. Little is known about how carbon and light signaling pathways intersect or influence one another to affect gene expression...
  6. pmc An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis
    Karen E Thum
    Department of Biology, New York University, New York, NY, 10003, USA
    BMC Syst Biol 2:31. 2008
    ..This study integrates genetic, genomic and systems approaches to identify a genetically perturbed gene network that is regulated by the interaction of carbon and light signaling in Arabidopsis...
  7. pmc Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis
    Mariana Obertello
    Center for Genomics and Systems Biology, Department of Biology, New York University, 1009 Main Building, New York, NY 10003, USA
    BMC Syst Biol 4:111. 2010
    ..We use ANOVA analysis combined with clustering and Boolean modeling, to evaluate the role of bZIP1 in mediating L and N signaling genome-wide...
  8. pmc A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule"
    Damion Nero
    Department of Biology, New York University, Center for Genomics and Systems Biology, New York 10003, USA
    BMC Syst Biol 3:59. 2009
    ..Herein, a systems biology approach was developed to identify the components and role of cross-talk between nitrate and hormone signals, likely to be involved in the conditional response of NO3- signaling...
  9. pmc EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes
    Eric D Brenner
    The New York Botanical Garden, 200th St and Kazimiroff, Bronx, NY 10458 5126, USA
    BMC Genomics 6:143. 2005
    ....
  10. pmc ESTimating plant phylogeny: lessons from partitioning
    Jose E B de la Torre
    Department of Biology, New York University, 100 Washington Sq East, New York, NY 10003, USA
    BMC Evol Biol 6:48. 2006
    ....
  11. pmc In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana
    Damion Nero
    Department of Biology, New York University, Center for Genomics and Systems Biology, New York, NY 10003, USA
    BMC Bioinformatics 10:435. 2009
    ..However, to date there has been no quantitative assessment as to which correlation measures or CRE detection methods used alone or in combination are most effective in predicting TF-->target relationships on a genome-wide scale...
  12. pmc Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
    Indra Neil Sarkar
    MBLWHOI Library, Marine Biological Laboratory, Woods Hole, MA, USA
    BMC Bioinformatics 9:103. 2008
    ..A significant bottleneck in the analysis of genomic-scale views of the tree of life is the time required for manual curation of genomic data into multi-gene phylogenetic matrices...
  13. pmc A functional phylogenomic view of the seed plants
    Ernest K Lee
    Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America
    PLoS Genet 7:e1002411. 2011
    ..Our approach takes advantage of genomic data to define orthologs, reconstruct relationships, and narrow down candidate genes involved in plant evolution within a phylogenomic view of species' diversification...
  14. ncbi request reprint Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana
    Joanna C Chiu
    Department of Biology, New York University, New York 10003, USA
    Mol Biol Evol 19:1066-82. 2002
    ..The three AtGLR clades do not show distinct clade-specific organ expression patterns. All 20 AtGLR genes are expressed in the root. Among them, five of the nine clade-II genes are root-specific in 8-week-old Arabidopsis plants...
  15. pmc Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1
    Rodrigo A Gutierrez
    Department of Biology, New York University, 100 Washington Square East, 1009 Main Building, New York, NY 10003, USA
    Proc Natl Acad Sci U S A 105:4939-44. 2008
    ..Phase response curve analysis shows that distinct N-metabolites can advance or delay the CCA1 phase. Regulation of CCA1 by organic N signals may represent a novel input mechanism for N-nutrients to affect plant circadian clock function...
  16. ncbi request reprint Arabidopsis glt1-T mutant defines a role for NADH-GOGAT in the non-photorespiratory ammonium assimilatory pathway
    Muriel Lancien
    Department of Biology, New York University, 100 Washington Square East, 1009 Main Building, New York, NY 10003, USA
    Plant J 29:347-58. 2002
    ..Herein, we discuss the significance of NADH-GOGAT in non-photorespiratory ammonium assimilation and in glutamate synthesis required for plant development...
  17. pmc Cell-specific nitrogen responses mediate developmental plasticity
    Miriam L Gifford
    Center for Genomics and Systems Biology, New York University, 100 Washington Square East, New York, NY 10003, USA
    Proc Natl Acad Sci U S A 105:803-8. 2008
    ..Thus, the results make an important advance in our understanding of how multicellular organisms cope with environmental change at the cell level...
  18. ncbi request reprint Insights into the genomic nitrate response using genetics and the Sungear Software System
    Rodrigo A Gutierrez
    Department of Biology, New York University, New York, NY 10003, USA
    J Exp Bot 58:2359-67. 2007
    ..By contrast, other processes such as protein synthesis respond only under a subset of conditions (context-dependent). Data from the NR-null mutant suggest these latter processes may be regulated by downstream nitrogen metabolites...
  19. pmc Overexpression of the ASN1 gene enhances nitrogen status in seeds of Arabidopsis
    Hon Ming Lam
    Department of Biology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong Special Administrative Region
    Plant Physiol 132:926-35. 2003
    ..This was at least partially due to an enhanced transport of Asn from source to sink via the phloem, as demonstrated by the increased levels of Asn in phloem exudates of the 35S-ASN1 plants...
  20. ncbi request reprint OrthologID: automation of genome-scale ortholog identification within a parsimony framework
    Joanna C Chiu
    Department of Biology, New York University, New York, NY 10003, USA
    Bioinformatics 22:699-707. 2006
    ..In contrast, orthology determination within a character-based phylogenetic framework has not been utilized on a genomic scale owing to the lack of efficiency and automation...
  21. pmc Correlation of ASN2 gene expression with ammonium metabolism in Arabidopsis
    Hon Kit Wong
    Department of Biology, The Chinese University of Hong Kong, Shatin, N T, Hong Kong, People s Republic of China
    Plant Physiol 134:332-8. 2004
    ..These results support the notion that ASN2 is closely correlated to ammonium metabolism in higher plants...
  22. pmc Molecular and physiological analysis of Arabidopsis mutants defective in cytosolic or chloroplastic aspartate aminotransferase
    Barbara H Miesak
    Department of Biology, 100 Washington Square East, New York University, New York, NY 10003, USA
    Plant Physiol 129:650-60. 2002
    ..As such, the cytosolic AAT2 isoenzyme appears to serve a nonredundant function in plant nitrogen metabolism of Asp and Asp-derived amino acids...
  23. pmc Expressed sequence tag analysis in Cycas, the most primitive living seed plant
    Eric D Brenner
    The New York Botanical Garden, 200th Street and Kazimiroff, Bronx, NY 10458 5126, USA
    Genome Biol 4:R78. 2003
    ..Cycads have also been implicated as the source of 'Guam's dementia', possibly due to the production of S(+)-beta-methyl-alpha, beta-diaminopropionic acid (BMAA), which is an agonist of animal glutamate receptors...
  24. pmc Overexpression of cytosolic glutamine synthetase. Relation to nitrogen, light, and photorespiration
    Igor C Oliveira
    Department of Biology, New York University, NY 10003, USA
    Plant Physiol 129:1170-80. 2002
    ..Our studies provide further support for the notion that the ectopic overexpression of genes for cytosolic GS1 can potentially be used to affect increases in nitrogen use efficiency in transgenic crop plants...
  25. pmc Light- and carbon-signaling pathways. Modeling circuits of interactions
    Karen E Thum
    Department of Biology, New York University, New York 10003, USA
    Plant Physiol 132:440-52. 2003
    ..These studies indicate the interaction of carbon with blue, red, and far-red-light signaling and set the stage for further investigation into modeling this complex web of interacting pathways using systems biology approaches...
  26. ncbi request reprint Sungear: interactive visualization and functional analysis of genomic datasets
    Christopher S Poultney
    Courant Institute of Mathematical Sciences, New York University, New York, NY, USA
    Bioinformatics 23:259-61. 2007
    ..AVAILABILITY: A live online version of Sungear can be found at http://virtualplant-prod.bio.nyu.edu/cgi-bin/sungear/index.cgi..
  27. pmc Systems biology for the virtual plant
    Rodrigo A Gutierrez
    Department of Biology, New York University, New York, New York 10003, USA
    Plant Physiol 138:550-4. 2005

Research Grants22

  1. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2007
    ..They also provide a valuable proof-of-principle study for the application of these approaches and tools to model other regulatory circuits in biological and medical systems. ..
  2. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2002
    ..We will also use forward genetic approaches to isolate amino acid sensing/signaling mutants in Arabidopsis which may identify components of these evolutionarily conserved amino acid signaling pathways or novel pathways. ..
  3. A systems approach to regulatory networks controlling N-assimilation
    Gloria M Coruzzi; Fiscal Year: 2010
    ....
  4. A systems approach to regulatory networks controlling N-assimilation
    Gloria Coruzzi; Fiscal Year: 2009
    ....
  5. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2006
    ..They also provide a valuable proof-of-principle study for the application of these approaches and tools to model other regulatory circuits in biological and medical systems. ..
  6. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2005
    ..They also provide a valuable proof-of-principle study for the application of these approaches and tools to model other regulatory circuits in biological and medical systems. ..
  7. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2003
    ..We will also use forward genetic approaches to isolate amino acid sensing/signaling mutants in Arabidopsis which may identify components of these evolutionarily conserved amino acid signaling pathways or novel pathways. ..
  8. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2003
    ..We will also use forward genetic approaches to isolate amino acid sensing/signaling mutants in Arabidopsis which may identify components of these evolutionarily conserved amino acid signaling pathways or novel pathways. ..
  9. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2002
    ..We will also use forward genetic approaches to isolate amino acid sensing/signaling mutants in Arabidopsis which may identify components of these evolutionarily conserved amino acid signaling pathways or novel pathways. ..
  10. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2001
    ..We will also use forward genetic approaches to isolate amino acid sensing/signaling mutants in Arabidopsis which may identify components of these evolutionarily conserved amino acid signaling pathways or novel pathways. ..
  11. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 1993
    ..9) Determine whether ectopic expression of factor modulates endogenous GS and AS gene expression and/or affects nitrogen assimilation...
  12. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2000
    ..We will also use forward genetic approaches to isolate amino acid sensing/signaling mutants in Arabidopsis which may identify components of these evolutionarily conserved amino acid signaling pathways or novel pathways. ..
  13. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2004
    ..They also provide a valuable proof-of-principle study for the application of these approaches and tools to model other regulatory circuits in biological and medical systems. ..
  14. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 1999
    ..Furthermore, as metabolic signaling also occurs in animals, insights into this process may be more readily obtained using a molecular-genetic strategy in Arabidopsis. ..
  15. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 2002
    ..We will also use forward genetic approaches to isolate amino acid sensing/signaling mutants in Arabidopsis which may identify components of these evolutionarily conserved amino acid signaling pathways or novel pathways. ..
  16. REGULATION OF AMINO ACID BIOSYNTHESIS GENES IN PLANTS
    Gloria Coruzzi; Fiscal Year: 1992
    ..9) Determine whether ectopic expression of factor modulates endogenous GS and AS gene expression and/or affects nitrogen assimilation...