P M Vallone

Summary

Affiliation: National Institute of Standards and Technology
Country: USA

Publications

  1. ncbi request reprint High-throughput Y-STR typing of U.S. populations with 27 regions of the Y chromosome using two multiplex PCR assays
    Richard Schoske
    Biotechnology Division, National Institute of Technology, 100 Bureau Drive, Mail Stop 8311, Gaithersburg, MD 20899, USA
    Forensic Sci Int 139:107-21. 2004
  2. pmc Allele frequencies for 40 autosomal SNP loci typed for US population samples using electrospray ionization mass spectrometry
    Kevin M Kiesler
    Biomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, MD, 20899 8314, USA
    Croat Med J 54:225-31. 2013
  3. doi request reprint Capillary electrophoresis of an 11-plex mtDNA coding region SNP single base extension assay for discrimination of the most common Caucasian HV1/HV2 mitotype
    Peter M Vallone
    Biochemical Science Division, National Institute of Standards and Technology, Gaithersburg, MD, USA
    Methods Mol Biol 830:159-67. 2012
  4. doi request reprint Forensic application of the Affymetrix human mitochondrial resequencing array
    P M Vallone
    National Institute of Standards and Technology NIST, Biochemical Sciences Division, 100 Bureau Dr, M S 8311, Gaithersburg, MD 20899 8311, United States
    Forensic Sci Int Genet 1:196-8. 2007
  5. ncbi request reprint Allele frequencies for 70 autosomal SNP loci with U.S. Caucasian, African-American, and Hispanic samples
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 8311, USA
    Forensic Sci Int 149:279-86. 2005
  6. ncbi request reprint AutoDimer: a screening tool for primer-dimer and hairpin structures
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
    Biotechniques 37:226-31. 2004
  7. ncbi request reprint A multiplex allele-specific primer extension assay for forensically informative SNPs distributed throughout the mitochondrial genome
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, 100 Bureau Drive, Mail Stop 8311, Gaithersburg, MD 20899, USA
    Int J Legal Med 118:147-57. 2004
  8. ncbi request reprint A strategy for examining complex mixtures of deoxyoligonucleotides using ion-pair-reverse-phase high-performance liquid chromatography, matrix-assisted laser desorption ionization time-of-flight mass spectrometry, and informatics
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, 100 Bureau Drive, Mail Stop 8311, Gaithersburg, MD 20899, USA
    Anal Biochem 304:257-65. 2002
  9. ncbi request reprint Genotyping of two mutations in the HFE gene using single-base extension and high-performance liquid chromatography
    J M Devaney
    Transgenomic Inc, Gaithersburg, Maryland 20878, USA
    Anal Chem 73:620-4. 2001
  10. ncbi request reprint Capillary electrophoresis as a tool for optimization of multiplex PCR reactions
    J M Butler
    National Institute of Standards and Technology, Biotechnology Division, Gaithersburg, MD 20899, USA
    Fresenius J Anal Chem 369:200-5. 2001

Detail Information

Publications25

  1. ncbi request reprint High-throughput Y-STR typing of U.S. populations with 27 regions of the Y chromosome using two multiplex PCR assays
    Richard Schoske
    Biotechnology Division, National Institute of Technology, 100 Bureau Drive, Mail Stop 8311, Gaithersburg, MD 20899, USA
    Forensic Sci Int 139:107-21. 2004
    ..Samples containing the most common type in the European database could be well resolved with additional markers beyond the minimal haplotype loci...
  2. pmc Allele frequencies for 40 autosomal SNP loci typed for US population samples using electrospray ionization mass spectrometry
    Kevin M Kiesler
    Biomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, MD, 20899 8314, USA
    Croat Med J 54:225-31. 2013
    ..To type a set of 194 US African American, Caucasian, and Hispanic samples (self-declared ancestry) for 40 autosomal single nucleotide polymorphism (SNP) markers intended for human identification purposes...
  3. doi request reprint Capillary electrophoresis of an 11-plex mtDNA coding region SNP single base extension assay for discrimination of the most common Caucasian HV1/HV2 mitotype
    Peter M Vallone
    Biochemical Science Division, National Institute of Standards and Technology, Gaithersburg, MD, USA
    Methods Mol Biol 830:159-67. 2012
    ..Separation and detection can be accomplished with a capillary-based electrophoresis platform commonly found in most forensic laboratories...
  4. doi request reprint Forensic application of the Affymetrix human mitochondrial resequencing array
    P M Vallone
    National Institute of Standards and Technology NIST, Biochemical Sciences Division, 100 Bureau Dr, M S 8311, Gaithersburg, MD 20899 8311, United States
    Forensic Sci Int Genet 1:196-8. 2007
    ..Here we evaluate the potential of the Affymetrix GeneChip Mitochondrial Resequencing Array (version 2.0) for forensic applications...
  5. ncbi request reprint Allele frequencies for 70 autosomal SNP loci with U.S. Caucasian, African-American, and Hispanic samples
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 8311, USA
    Forensic Sci Int 149:279-86. 2005
    ..The final pair of unrelated samples could be resolved with the combination of 4 STR loci: D2S1338, D18S51, FGA, and VWA...
  6. ncbi request reprint AutoDimer: a screening tool for primer-dimer and hairpin structures
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
    Biotechniques 37:226-31. 2004
    ..Sodium counterion and total stand concentrations can be adjusted for the Tm and deltaG calculations. The predicted interactions are saved in a text file for further evaluation...
  7. ncbi request reprint A multiplex allele-specific primer extension assay for forensically informative SNPs distributed throughout the mitochondrial genome
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, 100 Bureau Drive, Mail Stop 8311, Gaithersburg, MD 20899, USA
    Int J Legal Med 118:147-57. 2004
    ..We demonstrate that the assay performs well for heteroplasmy and mixture detection, and for typical mtDNA casework samples with highly degraded DNA...
  8. ncbi request reprint A strategy for examining complex mixtures of deoxyoligonucleotides using ion-pair-reverse-phase high-performance liquid chromatography, matrix-assisted laser desorption ionization time-of-flight mass spectrometry, and informatics
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, 100 Bureau Drive, Mail Stop 8311, Gaithersburg, MD 20899, USA
    Anal Biochem 304:257-65. 2002
    ..IP-RP HPLC, MALDI-TOF MS, exonuclease digests, and a simple computational algorithm provide an integrated strategy for determining the sequence of short nucleic acid oligomers...
  9. ncbi request reprint Genotyping of two mutations in the HFE gene using single-base extension and high-performance liquid chromatography
    J M Devaney
    Transgenomic Inc, Gaithersburg, Maryland 20878, USA
    Anal Chem 73:620-4. 2001
    ..This assay allows concurrent genotyping of the C282Y and H63D mutations in 11 min and is 100% concordant with current testing methods for both of these mutations...
  10. ncbi request reprint Capillary electrophoresis as a tool for optimization of multiplex PCR reactions
    J M Butler
    National Institute of Standards and Technology, Biotechnology Division, Gaithersburg, MD 20899, USA
    Fresenius J Anal Chem 369:200-5. 2001
    ..The rapid separation and quantitation capabilities of capillary electrophoresis make it an efficient technique to help in the multiplex PCR optimization process...
  11. ncbi request reprint Quality control of PCR primers used in multiplex STR amplification reactions
    J M Butler
    Biotechnology Division, National Institute of Standards and Technology, 100 Bureau Drive, Mail Stop 8311, Gaithersburg, MD 20899, USA
    Forensic Sci Int 119:87-96. 2001
    ..We present here the use of high performance liquid chromatography (HPLC) and time-of-flight mass spectrometry (TOF-MS) methods for characterization of commercially available STR kits...
  12. doi request reprint The impact of additional Y-STR loci on resolving common haplotypes and closely related individuals
    A E Decker
    National Institute of Standards and Technology, Biochemical Science Division, Gaithersburg, MD 20899, United States
    Forensic Sci Int Genet 1:215-7. 2007
    ..S. population groups. Additional Y-STRs can also increase the power of discrimination between closely related male individuals, which is important not only in forensics but also in the paternity and genetic genealogy communities...
  13. doi request reprint Demonstration of rapid multiplex PCR amplification involving 16 genetic loci
    Peter M Vallone
    National Institute of Standards and Technology, Biochemical Science Division, 100 Bureau Drive, Mail Stop 8311, Gaithersburg, MD 20899 8311, USA
    Forensic Sci Int Genet 3:42-5. 2008
    ..84...
  14. doi request reprint Production and certification of NIST Standard Reference Material 2372 Human DNA Quantitation Standard
    Margaret C Kline
    Biochemical Science Division, National Institute of Standards and Technology, 100 Bureau Drive, MS 8311, Gaithersburg, MD 20899 8311, USA
    Anal Bioanal Chem 394:1183-92. 2009
    ....
  15. doi request reprint A 26plex autosomal STR assay to aid human identity testing*
    Carolyn R Hill
    Biochemical Science Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 8311, USA
    J Forensic Sci 54:1008-15. 2009
    ..The 26plex has the potential to benefit the forensic community for reference sample testing and complex relationship evaluation...
  16. ncbi request reprint Allele frequencies for 27 Y-STR loci with U.S. Caucasian, African American, and Hispanic samples
    John M Butler
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 8311, USA
    Forensic Sci Int 156:250-60. 2006
    ..Allele frequencies for each locus are reported along with nomenclature based on sequence analysis...
  17. ncbi request reprint Effective strategies for forensic analysis in the mitochondrial DNA coding region
    Michael D Coble
    Biotechnology Division, National Institute of Standards and Technology, 100Bureau Drive Mail Stop 8311, Gaithersburg, MD 20899, USA
    Int J Legal Med 120:27-32. 2006
    ..This is true even when only synonymous variation is targeted to minimize the potential for problems arising from discovery of mutations that have reportedly been related to disease...
  18. ncbi request reprint Chromosomal duplications along the Y-chromosome and their potential impact on Y-STR interpretation
    John M Butler
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
    J Forensic Sci 50:853-9. 2005
    ..In addition, duplicated loci typically possess alleles that differ by only a single repeat unit and possess similar peak heights...
  19. ncbi request reprint Mitochondrial DNA typing screens with control region and coding region SNPs
    Margaret C Kline
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
    J Forensic Sci 50:377-85. 2005
    ..These types of screening assays should enable more rapid evaluation of forensic casework samples such that only samples not excluded would be subjected to further characterization through full HVI/HVII mtDNA sequence analysis...
  20. ncbi request reprint A novel multiplex for simultaneous amplification of 20 Y chromosome STR markers
    John M Butler
    Biotechnology Division, National Institute of Standards and Technology, 100 Bureau Drive, Mail Stop 8311, Gaithersburg, MD 20899, USA
    Forensic Sci Int 129:10-24. 2002
    ..Haplotype comparisons between the 20plex and a commercially available kit found excellent agreement across the 76 samples in the Y chromosome consortium panel...
  21. ncbi request reprint Y-SNP typing of U.S. African American and Caucasian samples using allele-specific hybridization and primer extension
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 8311, USA
    J Forensic Sci 49:723-32. 2004
    ..A total of 18 unique haplogroups out of a possible 45 were observed in a group of 229 U.S. African American and Caucasian males with the majority of samples being assigned into 2 of the 18 haplogroups...
  22. ncbi request reprint Allele frequencies for 15 autosomal STR loci on U.S. Caucasian, African American, and Hispanic populations
    John M Butler
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 8311, USA
    J Forensic Sci 48:908-11. 2003
  23. ncbi request reprint Genotyping SNPs using a UV-photocleavable oligonucleotide in MALDI-TOF MS
    Peter M Vallone
    Biotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD, USA
    Methods Mol Biol 297:169-78. 2005
    ..Subsequently, the small fragments derived from the 3' ends of the molecules containing the genotype information were analyzed by matrix-assisted laser desorption ionization time-of-flight using a 3-hydroxypicolinic acid matrix...
  24. ncbi request reprint Toward increased utility of mtDNA in forensic identifications
    Rebecca S Just
    Armed Forces DNA Identification Laboratory, Armed Forces Institute of Pathology, AFIP Annex, 1413 Research Blvd, Rockville, MD 20850, USA
    Forensic Sci Int 146:S147-9. 2004
    ..A large-scale databasing effort targeting several populations underrepresented in current mtDNA databases is underway...
  25. ncbi request reprint Studies of DNA dumbbells VIII. Melting analysis of DNA dumbbells with dinucleotide repeat stem sequences
    Kathleen E Mandell
    Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Room 4500, 60607, USA
    Biopolymers 82:199-221. 2006
    ....