Vichetra Sam

Summary

Affiliation: National Institutes of Health
Country: USA

Publications

  1. pmc ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification
    Vichetra Sam
    Mathematical and Statistical Computing Laboratory, DCB, CIT, NIH, DHHS, Bethesda, MD, USA
    BMC Bioinformatics 7:206. 2006
  2. pmc Towards an automatic classification of protein structural domains based on structural similarity
    Vichetra Sam
    Mathematical and Statistical Computing Laboratory, DCB, CIT, NIH, DHHS, Bethesda, MD, USA
    BMC Bioinformatics 9:74. 2008
  3. pmc DOMIRE: a web server for identifying structural domains and their neighbors in proteins
    Franck Samson
    Institut National de la Recherche Agronomique, UR1077, Unité Mathématique, Informatique et Génome, 78350 Jouy en Josas, France
    Bioinformatics 28:1040-1. 2012
  4. pmc Protein domain assignment from the recurrence of locally similar structures
    Chin Hsien Tai
    Laboratory of Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA
    Proteins 79:853-66. 2011

Collaborators

  • Chin Hsien Tai
  • Franck Samson
  • Peter J Munson
  • Jean Garnier
  • Byungkook Lee
  • Richard Shrager
  • Jean Francois Gibrat

Detail Information

Publications4

  1. pmc ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification
    Vichetra Sam
    Mathematical and Statistical Computing Laboratory, DCB, CIT, NIH, DHHS, Bethesda, MD, USA
    BMC Bioinformatics 7:206. 2006
    ..Previous attempts to use computerized structure comparison methods show only partial agreement with curated databases, but have failed to provide detailed statistical and structural analysis of the causes of these divergences...
  2. pmc Towards an automatic classification of protein structural domains based on structural similarity
    Vichetra Sam
    Mathematical and Statistical Computing Laboratory, DCB, CIT, NIH, DHHS, Bethesda, MD, USA
    BMC Bioinformatics 9:74. 2008
    ..Another possibility is the difference between manual and automatic classification procedures. We explore the degree to which these two factors might affect the final classification...
  3. pmc DOMIRE: a web server for identifying structural domains and their neighbors in proteins
    Franck Samson
    Institut National de la Recherche Agronomique, UR1077, Unité Mathématique, Informatique et Génome, 78350 Jouy en Josas, France
    Bioinformatics 28:1040-1. 2012
    ..DOMIRE, by displaying the protein structural domain organization, can be a useful tool for defining protein common cores and for unravelling the evolutionary relationship between different proteins...
  4. pmc Protein domain assignment from the recurrence of locally similar structures
    Chin Hsien Tai
    Laboratory of Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA
    Proteins 79:853-66. 2011
    ..In addition, it indicates that domains are indeed made of recurrent small structural pieces that are used to build protein structures of many different folds as suggested by recent studies...