Joseph F Ryan

Summary

Affiliation: National Institutes of Health
Country: USA

Publications

  1. pmc Hox, Wnt, and the evolution of the primary body axis: insights from the early-divergent phyla
    Joseph F Ryan
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    Biol Direct 2:37. 2007
  2. pmc Nuclear receptors from the ctenophore Mnemiopsis leidyi lack a zinc-finger DNA-binding domain: lineage-specific loss or ancestral condition in the emergence of the nuclear receptor superfamily?
    Adam M Reitzel
    Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
    Evodevo 2:3. 2011
  3. pmc Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi
    Kevin Pang
    Kewalo Marine Laboratory, Pacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, HI, USA
    Evodevo 1:10. 2010
  4. pmc The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis
    Joseph F Ryan
    Bioinformatics Program, Boston University, Cummington Street, Boston, MA 02215, USA
    Genome Biol 7:R64. 2006
  5. pmc StellaBase: the Nematostella vectensis Genomics Database
    James C Sullivan
    Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA
    Nucleic Acids Res 34:D495-9. 2006
  6. pmc Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis
    Joseph F Ryan
    Bioinformatics Program, Boston University, Boston, Massachusetts, United States of America
    PLoS ONE 2:e153. 2007
  7. pmc Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes
    Christine E Schnitzler
    National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    BMC Biol 10:107. 2012
  8. ncbi request reprint Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis
    James C Sullivan
    Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA
    Dev Genes Evol 217:235-9. 2007
  9. ncbi request reprint Rising starlet: the starlet sea anemone, Nematostella vectensis
    John A Darling
    Department of Biology, Boston University, MA 02215, USA
    Bioessays 27:211-21. 2005
  10. pmc The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa
    Joseph F Ryan
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
    Evodevo 1:9. 2010

Collaborators

Detail Information

Publications15

  1. pmc Hox, Wnt, and the evolution of the primary body axis: insights from the early-divergent phyla
    Joseph F Ryan
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    Biol Direct 2:37. 2007
    ....
  2. pmc Nuclear receptors from the ctenophore Mnemiopsis leidyi lack a zinc-finger DNA-binding domain: lineage-specific loss or ancestral condition in the emergence of the nuclear receptor superfamily?
    Adam M Reitzel
    Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
    Evodevo 2:3. 2011
    ..In addition, to gain insight into conserved or novel functions, we examined NR expression during ctenophore development...
  3. pmc Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi
    Kevin Pang
    Kewalo Marine Laboratory, Pacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, HI, USA
    Evodevo 1:10. 2010
    ..Genomic data from ctenophores could be particularly relevant, as ctenophores have been proposed to be one of the earliest branching metazoan phyla...
  4. pmc The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis
    Joseph F Ryan
    Bioinformatics Program, Boston University, Cummington Street, Boston, MA 02215, USA
    Genome Biol 7:R64. 2006
    ..The origin of particular homeobox genes may, therefore, be associated with the evolution of particular animal traits. Here we report the first near-complete set of homeodomains from a basal (diploblastic) animal...
  5. pmc StellaBase: the Nematostella vectensis Genomics Database
    James C Sullivan
    Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA
    Nucleic Acids Res 34:D495-9. 2006
    ..In addition, StellaBase provides a framework for the integration of additional species-specific databases into CnidBase. StellaBase is available at http://www.stellabase.org...
  6. pmc Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis
    Joseph F Ryan
    Bioinformatics Program, Boston University, Boston, Massachusetts, United States of America
    PLoS ONE 2:e153. 2007
    ....
  7. pmc Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes
    Christine E Schnitzler
    National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    BMC Biol 10:107. 2012
    ..We combined our genomic survey with gene trees, developmental expression patterns, and functional protein assays of photoproteins and opsins to provide a comprehensive view of light production and light reception in Mnemiopsis...
  8. ncbi request reprint Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis
    James C Sullivan
    Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA
    Dev Genes Evol 217:235-9. 2007
    ..Wnt6 and Wnt10 are not expressed in a spatially or temporally contiguous manner, and Wnt5 and Wnt7 are expressed in different germ layers...
  9. ncbi request reprint Rising starlet: the starlet sea anemone, Nematostella vectensis
    John A Darling
    Department of Biology, Boston University, MA 02215, USA
    Bioessays 27:211-21. 2005
    ....
  10. pmc The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa
    Joseph F Ryan
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
    Evodevo 1:9. 2010
    ..The homeobox superfamily of genes is particularly suited for these kinds of gene content comparisons, since it is large, diverse, and features a highly conserved domain...
  11. pmc MicroRNAs and essential components of the microRNA processing machinery are not encoded in the genome of the ctenophore Mnemiopsis leidyi
    Evan K Maxwell
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    BMC Genomics 13:714. 2012
    ..The genomic repertoires of metazoan microRNAs have become increasingly endorsed as phylogenetic characters and drivers of biological complexity...
  12. pmc Lineage-specific evolution of the vertebrate Otopetrin gene family revealed by comparative genomic analyses
    Belen Hurle
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    BMC Evol Biol 11:23. 2011
    ....
  13. pmc The diversification of the LIM superclass at the base of the metazoa increased subcellular complexity and promoted multicellular specialization
    Bernard J Koch
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, United States of America
    PLoS ONE 7:e33261. 2012
    ..Despite their fundamental roles in cellular processes and human disease, little is known about the evolution of the LIM superclass...
  14. pmc CnidBase: The Cnidarian Evolutionary Genomics Database
    Joseph F Ryan
    Boston University, USA
    Nucleic Acids Res 31:159-63. 2003
    ..CnidBase is available at http://cnidbase.bu.edu/...
  15. pmc Parallel construction of orthologous sequence-ready clone contig maps in multiple species
    James W Thomas
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA
    Genome Res 12:1277-85. 2002
    ..The described approach can be used to facilitate the multispecies comparative sequencing of targeted genomic regions and can be adapted for constructing BAC contig maps in other vertebrates...