K D Pruitt

Summary

Affiliation: National Institutes of Health
Country: USA

Publications

  1. ncbi request reprint RefSeq: an update on mammalian reference sequences
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 42:D756-63. 2014
  2. ncbi request reprint Current status and new features of the Consensus Coding Sequence database
    Catherine M Farrell
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA, Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, Santa Cruz, CA 95064, USA, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK and Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 42:D865-72. 2014
  3. pmc Tracking and coordinating an international curation effort for the CCDS Project
    Rachel A Harte
    Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, Santa Cruz, CA 95064, USA
    Database (Oxford) 2012:bas008. 2012
  4. pmc Comparison of RefSeq protein-coding regions in human and vertebrate genomes
    Jessica H Fong
    National Center for Biotechnology Information, U, S, National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA
    BMC Genomics 14:654. 2013
  5. pmc NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 40:D130-5. 2012
  6. pmc The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, Bethesda, Maryland 20894, USA
    Genome Res 19:1316-23. 2009
  7. pmc NCBI Reference Sequences: current status, policy and new initiatives
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 4As 47B, 45 Center Drive, Bethesda, MD, USA
    Nucleic Acids Res 37:D32-6. 2009
  8. pmc NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 6An 12J, 45 Center Drive, Bethesda, MD 20892 6510, USA
    Nucleic Acids Res 35:D61-5. 2007
  9. pmc NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 6An 12J, 45 Center Drive, Bethesda, MD 20892 6510, USA
    Nucleic Acids Res 33:D501-4. 2005
  10. pmc NCBI Reference Sequence project: update and current status
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A Room 6N605, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 31:34-7. 2003

Collaborators

  • Donna R Maglott
  • Jessica H Fong
  • Adam Frankish
  • Guy St C Slater
  • Ewan Birney
  • Joshua L Cherry
  • Manolis Kellis
  • Clara Amid
  • William Klimke
  • Michael F Lin
  • Catherine M Farrell
  • Rachel A Harte
  • Craig Wallin
  • Mark Diekhans
  • Daniel Barrell
  • Jane E Loveland
  • Marie Marthe Suner
  • Bronwen Aken
  • Charles A Steward
  • Jennifer Hart
  • James G R Gilbert
  • Garth R Brown
  • Mike P Kay
  • Janet Weber
  • Lillian D Riddick
  • Stephen M J Searle
  • David Haussler
  • Ruth Bennett
  • Andrei Shkeda
  • David Webb
  • Robert Baertsch
  • Jonathan M Mudge
  • Mark Thomas
  • James M Ostell
  • Susan M Hiatt
  • Michael Murphy
  • Nuala A O'Leary
  • Stephen J Trevanion
  • Kelly M McGarvey
  • Wendy Wu
  • Catherine Snow
  • Pamela Tamez
  • Jose M Gonzalez
  • Jeena Rajan
  • Bhanu Rajput
  • Jennifer L Harrow
  • Shashikant Pujar
  • Laurens G Wilming
  • Toby Hunt
  • Sanjida H Rangwala
  • Tim Hubbard
  • Steve Searle
  • Jennifer Harrow
  • Laurens Wilming

Detail Information

Publications11

  1. ncbi request reprint RefSeq: an update on mammalian reference sequences
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 42:D756-63. 2014
    ..We also describe a revised protein annotation policy for alternatively spliced transcripts with more divergent predicted proteins and we summarize the current status of the RefSeqGene project. ..
  2. ncbi request reprint Current status and new features of the Consensus Coding Sequence database
    Catherine M Farrell
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA, Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, Santa Cruz, CA 95064, USA, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK and Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 42:D865-72. 2014
    ..We also present a summary of recent and future curation targets. ..
  3. pmc Tracking and coordinating an international curation effort for the CCDS Project
    Rachel A Harte
    Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, Santa Cruz, CA 95064, USA
    Database (Oxford) 2012:bas008. 2012
    ..Examples are provided to illustrate the application of these guidelines. DATABASE URL: http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi...
  4. pmc Comparison of RefSeq protein-coding regions in human and vertebrate genomes
    Jessica H Fong
    National Center for Biotechnology Information, U, S, National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA
    BMC Genomics 14:654. 2013
    ....
  5. pmc NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 40:D130-5. 2012
    ..More information about the resource is available online (see http://www.ncbi.nlm.nih.gov/RefSeq/)...
  6. pmc The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, Bethesda, Maryland 20894, USA
    Genome Res 19:1316-23. 2009
    ..The CCDS database thus centralizes the function of identifying well-supported, identically-annotated, protein-coding regions...
  7. pmc NCBI Reference Sequences: current status, policy and new initiatives
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 4As 47B, 45 Center Drive, Bethesda, MD, USA
    Nucleic Acids Res 37:D32-6. 2009
    ..In addition, we introduce RefSeqGene, a new initiative to support reporting variation data on a stable genomic coordinate system...
  8. pmc NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 6An 12J, 45 Center Drive, Bethesda, MD 20892 6510, USA
    Nucleic Acids Res 35:D61-5. 2007
    ..The format of all RefSeq records is validated, and an increasing number of tests are being applied to evaluate the quality of sequence and annotation, especially in the context of complete genomic sequence...
  9. pmc NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 6An 12J, 45 Center Drive, Bethesda, MD 20892 6510, USA
    Nucleic Acids Res 33:D501-4. 2005
    ....
  10. pmc NCBI Reference Sequence project: update and current status
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A Room 6N605, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 31:34-7. 2003
    ..The collection is curated on an ongoing basis. Additional information about the NCBI RefSeq project is available at http://www.ncbi.nih.gov/RefSeq/...
  11. pmc RefSeq and LocusLink: NCBI gene-centered resources
    K D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A Room 6N605, 8600 Rockville Pike, Bethesda, MD 20894 USA
    Nucleic Acids Res 29:137-40. 2001
    ..Additional information about LocusLink and RefSeq is available at http://www.ncbi.nlm.nih.gov/LocusLink/...