Phillip A Morin

Summary

Affiliation: National Oceanic and Atmospheric Administration
Country: USA

Publications

  1. pmc Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae
    Julia T Vilstrup
    Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5 7, 1350 Copenhagen, Denmark
    BMC Evol Biol 11:65. 2011
  2. ncbi request reprint Interfamilial characterization of a region of the ZFX and ZFY genes facilitates sex determination in cetaceans and other mammals
    Phillip A Morin
    National Marine Fisheries Service, Southwest Fisheries Science Center, 8604 La Jolla Shores Drive, La Jolla, CA 92037, USA
    Mol Ecol 14:3275-86. 2005
  3. pmc Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
    Phillip A Morin
    National Marine Fisheries Service, Southwest Fisheries Science Center, La Jolla, California 92037, USA
    Genome Res 20:908-16. 2010
  4. doi request reprint Applied conservation genetics and the need for quality control and reporting of genetic data used in fisheries and wildlife management
    Phillip A Morin
    Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, CA 92037, USA
    J Hered 101:1-10. 2010
  5. doi request reprint Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
    Brittany L Hancock-Hanser
    Protected Resources Division, Southwest Fisheries Science Center, National Marine Fisheries Service, NOAA, 8901 La Jolla Shores Drive, La Jolla, CA 92037, USA
    Mol Ecol Resour 13:254-68. 2013
  6. pmc Mitogenomic phylogenetics of fin whales (Balaenoptera physalus spp.): genetic evidence for revision of subspecies
    Frederick I Archer
    Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, California, United States of America
    PLoS ONE 8:e63396. 2013
  7. doi request reprint Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA
    Sarah L Mesnick
    Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, La Jolla, CA 92037, USA
    Mol Ecol Resour 11:278-98. 2011
  8. doi request reprint Marine turtle mitogenome phylogenetics and evolution
    Sebastián Duchêne
    Protected Resources Division, Southwest Fisheries Science Center, National Marine Fisheries Service, NOAA, La Jolla, CA 92037, USA
    Mol Phylogenet Evol 65:241-50. 2012
  9. doi request reprint Significant deviations from Hardy-Weinberg equilibrium caused by low levels of microsatellite genotyping errors
    Phillip A Morin
    Southwest Fisheries Science Center, NOAA Fisheries, 3333 N, Torrey Pines Ct, La Jolla, CA 92037, USA Center for the Environment, Purdue University, 503 Northwestern Avenue, West Lafayette, IN 47907 2966, USA
    Mol Ecol Resour 9:498-504. 2009
  10. doi request reprint Characterization of single nucleotide polymorphism markers for the green sea turtle (Chelonia mydas)
    Suzanne E Roden
    NOAA Fisheries, Southwest Fisheries Science Center, 8604 La Jolla Shores Drive, La Jolla, CA 92037, USA University of San Diego, 5998 Alcala Park, San Diego, CA 92110, USA
    Mol Ecol Resour 9:1055-60. 2009

Collaborators

Detail Information

Publications18

  1. pmc Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae
    Julia T Vilstrup
    Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5 7, 1350 Copenhagen, Denmark
    BMC Evol Biol 11:65. 2011
    ..Further ad hoc tests were then conducted to estimate the support for alternative topologies...
  2. ncbi request reprint Interfamilial characterization of a region of the ZFX and ZFY genes facilitates sex determination in cetaceans and other mammals
    Phillip A Morin
    National Marine Fisheries Service, Southwest Fisheries Science Center, 8604 La Jolla Shores Drive, La Jolla, CA 92037, USA
    Mol Ecol 14:3275-86. 2005
    ..Given the availability of conserved primers and sequence information for many mammalian species, this approach to designing sexing assays for a wide range of species is both practical and efficient...
  3. pmc Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
    Phillip A Morin
    National Marine Fisheries Service, Southwest Fisheries Science Center, La Jolla, California 92037, USA
    Genome Res 20:908-16. 2010
    ..We predict that phylogeographic mitogenomics will become an important tool for improved statistical phylogeography and more precise estimates of divergence times...
  4. doi request reprint Applied conservation genetics and the need for quality control and reporting of genetic data used in fisheries and wildlife management
    Phillip A Morin
    Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, CA 92037, USA
    J Hered 101:1-10. 2010
    ..These supplementary data serve to reduce the occurrence of legal and conservation controversies and improve reproducibility over time in population genetics studies where genetic monitoring is likely to play an increasing role...
  5. doi request reprint Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
    Brittany L Hancock-Hanser
    Protected Resources Division, Southwest Fisheries Science Center, National Marine Fisheries Service, NOAA, 8901 La Jolla Shores Drive, La Jolla, CA 92037, USA
    Mol Ecol Resour 13:254-68. 2013
    ..These NGS and analysis techniques have allowed for simultaneous population genomic studies of mtDNA and nDNA with greater genomic coverage and phylogeographic resolution than has previously been possible in marine mammals and turtles...
  6. pmc Mitogenomic phylogenetics of fin whales (Balaenoptera physalus spp.): genetic evidence for revision of subspecies
    Frederick I Archer
    Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, California, United States of America
    PLoS ONE 8:e63396. 2013
    ..37 Ma. These results provide strong evidence that North Pacific and North Atlantic fin whales should not be considered the same subspecies, and suggest the need for revision of the global taxonomy of the species...
  7. doi request reprint Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA
    Sarah L Mesnick
    Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, La Jolla, CA 92037, USA
    Mol Ecol Resour 11:278-98. 2011
    ..There is a need for better analytical methods for SNPs, especially when linked SNPs are used, but SNPs appear to be a valuable marker for long-term studies of globally dispersed and highly mobile species...
  8. doi request reprint Marine turtle mitogenome phylogenetics and evolution
    Sebastián Duchêne
    Protected Resources Division, Southwest Fisheries Science Center, National Marine Fisheries Service, NOAA, La Jolla, CA 92037, USA
    Mol Phylogenet Evol 65:241-50. 2012
    ..Overall, our results demonstrate the complexity of sea-turtle diversity, and indicate the need for further research in phylogeography and molecular evolution...
  9. doi request reprint Significant deviations from Hardy-Weinberg equilibrium caused by low levels of microsatellite genotyping errors
    Phillip A Morin
    Southwest Fisheries Science Center, NOAA Fisheries, 3333 N, Torrey Pines Ct, La Jolla, CA 92037, USA Center for the Environment, Purdue University, 503 Northwestern Avenue, West Lafayette, IN 47907 2966, USA
    Mol Ecol Resour 9:498-504. 2009
    ..To avoid such bias, we recommend routine identification of influential individuals and multiple replications of those samples...
  10. doi request reprint Characterization of single nucleotide polymorphism markers for the green sea turtle (Chelonia mydas)
    Suzanne E Roden
    NOAA Fisheries, Southwest Fisheries Science Center, 8604 La Jolla Shores Drive, La Jolla, CA 92037, USA University of San Diego, 5998 Alcala Park, San Diego, CA 92110, USA
    Mol Ecol Resour 9:1055-60. 2009
    ..However, two loci, SSCM4 and SSCM10b showed linkage disequilibrium across three populations indicating possible association...
  11. doi request reprint Assessing statistical power of SNPs for population structure and conservation studies
    Phillip A Morin
    Southwest Fisheries Science Center, 8604 La Jolla Shores Drive, La Jolla, CA 92037, USA
    Mol Ecol Resour 9:66-73. 2009
    ..This also has the practical benefit of reducing the SNP ascertainment effort, and may influence the decision of whether to seek SNPs in coding or noncoding regions...
  12. doi request reprint Normalization and binning of historical and multi-source microsatellite data: overcoming the problems of allele size shift with allelogram
    Phillip A Morin
    Southwest Fisheries Science Center, NOAA Fisheries, 3333 N Torrey Pines Ct, La Jolla, CA 92037, USA ActivX Biosciences, Inc, 11025 North Torrey Pines Road, Suite 120, La Jolla, CA 92037, USA
    Mol Ecol Resour 9:1451-5. 2009
    ..We present methods to normalize and bin alleles from multiple data sources using a relatively small set of controls and the freely available program allelogram...
  13. doi request reprint AFLP fragment isolation technique as a method to produce random sequences for single nucleotide polymorphism discovery in the green turtle, Chelonia mydas
    Suzanne E Roden
    Southwest Fisheries Science Center, La Jolla, CA 92037, USA
    J Hered 100:390-3. 2009
    ..Using this method, it was possible to yield a sufficient number of loci to screen for SNP markers without the availability of prior sequence information...
  14. pmc The effects of sequence length and oligonucleotide mismatches on 5' exonuclease assay efficiency
    Steve Smith
    Laboratory for Conservation Genetics and Department of Primatology, Max Planck Institute for Evolutionary Anthropology, Inselstrasse 22, 04103 Leipzig, Germany
    Nucleic Acids Res 30:e111. 2002
    ....
  15. ncbi request reprint Association of estrogen receptor alpha polymorphisms with breast cancer risk in older Caucasian women
    Francesmary Modugno
    Department of Epidemiology, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA
    Int J Cancer 116:984-91. 2005
    ..60 vs. 1.12 for nulliparous vs. parous women; interaction p = 0.03). ESR1 polymorphisms in combination with lifestyle factors may be associated with breast cancer risk in older Caucasian women...
  16. ncbi request reprint Estrogen metabolizing polymorphisms and breast cancer risk among older white women
    Francesmary Modugno
    Department of Epidemiology, Graduate School of Public Health, University of Pittsburgh, PA, USA
    Breast Cancer Res Treat 93:261-70. 2005
    ..To investigate breast cancer risk according to metabolizing genes polymorphisms in older women...
  17. ncbi request reprint Optimal storage conditions for highly dilute DNA samples: a role for trehalose as a preserving agent
    Steve Smith
    Laboratory for Conservation Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6 04103 Leipzig, Germany
    J Forensic Sci 50:1101-8. 2005
    ..Surprisingly, DNA quality was best preserved in the presence of trehalose, either dried or at -80 degrees C; significant quality loss occurred with -20 degrees C and +4 degrees C storage...
  18. ncbi request reprint Single nucleotide polymorphism (SNP) discovery in mammals: a targeted-gene approach
    Nicola Aitken
    Laboratory for Conservation Genetics, Max Planck Institute for Evolutionary Anthropology, Inselstrasse 22, D 04103, Leipzig, Germany
    Mol Ecol 13:1423-31. 2004
    ....