Jessica H Fong

Summary

Affiliation: National Institutes of Health
Country: USA

Publications

  1. pmc Intrinsic disorder and protein multibinding in domain, terminal, and linker regions
    Jessica H Fong
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Mol Biosyst 6:1821-8. 2010
  2. pmc Protein subfamily assignment using the Conserved Domain Database
    Jessica H Fong
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA
    BMC Res Notes 1:114. 2008
  3. pmc Intrinsic protein disorder in human pathways
    Jessica H Fong
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
    Mol Biosyst 8:320-6. 2012
  4. pmc CORAL: aligning conserved core regions across domain families
    Jessica H Fong
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Bioinformatics 25:1862-8. 2009
  5. pmc IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins
    Benjamin A Shoemaker
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Building 38A, Bethesda, MD 20894, USA
    Nucleic Acids Res 40:D834-40. 2012
  6. pmc Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites
    Benjamin A Shoemaker
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Nucleic Acids Res 38:D518-24. 2010
  7. pmc CDD: a Conserved Domain Database for the functional annotation of proteins
    Aron Marchler-Bauer
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bldg 38 A, Room 8N805, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 39:D225-9. 2011
  8. pmc CDD: specific functional annotation with the Conserved Domain Database
    Aron Marchler-Bauer
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bldg 38 A, Room 8N805, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 37:D205-10. 2009
  9. pmc Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis
    Jessica H Fong
    National Center for Biotechnology Information, National Institutes of Health, Bethesda, Maryland, United States of America
    PLoS Comput Biol 5:e1000316. 2009
  10. pmc Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes
    Hafumi Nishi
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
    Mol Biosyst 9:1620-6. 2013

Detail Information

Publications13

  1. pmc Intrinsic disorder and protein multibinding in domain, terminal, and linker regions
    Jessica H Fong
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Mol Biosyst 6:1821-8. 2010
    ..In particular, they support the hypothesis that protein domains with many interacting partners should have a pleiotropic effect on functional pathways and consequently might be more constrained in evolution...
  2. pmc Protein subfamily assignment using the Conserved Domain Database
    Jessica H Fong
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA
    BMC Res Notes 1:114. 2008
    ..Here, we propose a method for assigning NCBI-curated domains from the Curated Domain Database (CDD) that takes into account the organization of the domains into hierarchies of homologous domain models...
  3. pmc Intrinsic protein disorder in human pathways
    Jessica H Fong
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
    Mol Biosyst 8:320-6. 2012
    ..Finally we find that relations involving protein activation and to some extent inhibition are characterized by low disorder content...
  4. pmc CORAL: aligning conserved core regions across domain families
    Jessica H Fong
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Bioinformatics 25:1862-8. 2009
    ..To improve accuracy in aligning such protein families, we propose a profile-profile method CORAL that aligns individual core regions as gap-free units...
  5. pmc IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins
    Benjamin A Shoemaker
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Building 38A, Bethesda, MD 20894, USA
    Nucleic Acids Res 40:D834-40. 2012
    ..The IBIS server is available at http://www.ncbi.nlm.nih.gov/Structure/ibis/ibis.cgi and updated biweekly...
  6. pmc Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites
    Benjamin A Shoemaker
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Nucleic Acids Res 38:D518-24. 2010
    ..IBIS is updated regularly and is freely accessible via http://www.ncbi.nlm.nih.gov/Structure/ibis/ibis.html...
  7. pmc CDD: a Conserved Domain Database for the functional annotation of proteins
    Aron Marchler-Bauer
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bldg 38 A, Room 8N805, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 39:D225-9. 2011
    ..CDD can be accessed via http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml...
  8. pmc CDD: specific functional annotation with the Conserved Domain Database
    Aron Marchler-Bauer
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bldg 38 A, Room 8N805, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 37:D205-10. 2009
    ....
  9. pmc Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis
    Jessica H Fong
    National Center for Biotechnology Information, National Institutes of Health, Bethesda, Maryland, United States of America
    PLoS Comput Biol 5:e1000316. 2009
    ..The fascinating diversity of roles of disordered regions in various biological processes and protein oligomeric forms shown in our study may be a subject of future endeavors in this area...
  10. pmc Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes
    Hafumi Nishi
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
    Mol Biosyst 9:1620-6. 2013
    ..We analyze possible mechanisms of how phosphorylation might regulate protein-protein binding via intrinsic disorder, and specifically focus on how phosphorylation could prevent disorder-order transitions upon binding...
  11. pmc MMDB: 3D structures and macromolecular interactions
    Thomas Madej
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bldg 38 A, Room 8N805, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 40:D461-4. 2012
    ..MMDB can be accessed at http://www.ncbi.nlm.nih.gov/structure...
  12. pmc Comparison of RefSeq protein-coding regions in human and vertebrate genomes
    Jessica H Fong
    National Center for Biotechnology Information, U, S, National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA
    BMC Genomics 14:654. 2013
    ....
  13. pmc Modeling the evolution of protein domain architectures using maximum parsimony
    Jessica H Fong
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA
    J Mol Biol 366:307-15. 2007
    ..Domain architecture "neighbors" identified in this way may lead to new insights about the evolution of protein function...