Dina Demner-Fushman

Summary

Affiliation: National Institutes of Health
Country: USA

Publications

  1. pmc Automatically identifying health outcome information in MEDLINE records
    Dina Demner-Fushman
    Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA
    J Am Med Inform Assoc 13:52-60. 2006
  2. pmc Frontiers of biomedical text mining: current progress
    Pierre Zweigenbaum
    LIMSI CNRS, BP 133, 91403 Orsay Cedex, France
    Brief Bioinform 8:358-75. 2007
  3. pmc The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers
    Casey Lynnette Overby
    Department of Medical Education and Biomedical Informatics, University of Washington, Seattle, WA, USA
    BMC Bioinformatics 10:S8. 2009
  4. pmc UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text
    Dina Demner-Fushman
    Lister Hill National Center for Biomedical Communications LHNCBC, U S National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    J Biomed Inform 43:587-94. 2010
  5. ncbi request reprint Organizing literature information for clinical decision support
    Dina Demner-Fushman
    Communications Engineering Branch, Lister Hill National Center for Biomedical Communications, National Library of Medicine, NIH DHHS, Bethesda, MD 20894, USA
    Stud Health Technol Inform 107:602-6. 2004
  6. pmc What can natural language processing do for clinical decision support?
    Dina Demner-Fushman
    U S National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    J Biomed Inform 42:760-72. 2009
  7. pmc Annotation and retrieval of clinically relevant images
    Dina Demner-Fushman
    Communications Engineering Branch, Lister Hill National Center for Biomedical Communications, US National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Int J Med Inform 78:e59-67. 2009
  8. ncbi request reprint PubMed on Tap: discovering design principles for online information delivery to handheld computers
    Susan E Hauser
    Communications Engineering Branch, Lister Hill National Center for Biomedical Communications, NLM, NIH, Bethesda, MD 20894, USA
    Stud Health Technol Inform 107:1430-3. 2004
  9. pmc Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation
    Marcelo Fiszman
    National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bldg 38A, Rm B1N 28J, Bethesda, MD 20894, USA
    J Biomed Inform 42:801-13. 2009
  10. pmc Comparison and combination of several MeSH indexing approaches
    Antonio José Jimeno Yepes
    NICTA Victoria Research Lab, Melbourne VIC 3010, Australia National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA
    AMIA Annu Symp Proc 2013:709-18. 2013

Collaborators

Detail Information

Publications25

  1. pmc Automatically identifying health outcome information in MEDLINE records
    Dina Demner-Fushman
    Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA
    J Am Med Inform Assoc 13:52-60. 2006
    ..This study presents a methodology for automatic identification of outcomes-related information in medical text and evaluates its potential in satisfying clinical information needs related to health care outcomes...
  2. pmc Frontiers of biomedical text mining: current progress
    Pierre Zweigenbaum
    LIMSI CNRS, BP 133, 91403 Orsay Cedex, France
    Brief Bioinform 8:358-75. 2007
    ..In this article we review the current state of the art in biomedical text mining or 'BioNLP' in general, focusing primarily on papers published within the past year...
  3. pmc The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers
    Casey Lynnette Overby
    Department of Medical Education and Biomedical Informatics, University of Washington, Seattle, WA, USA
    BMC Bioinformatics 10:S8. 2009
    ....
  4. pmc UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text
    Dina Demner-Fushman
    Lister Hill National Center for Biomedical Communications LHNCBC, U S National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    J Biomed Inform 43:587-94. 2010
    ..5% precision at 78.6% recall for clinical applications...
  5. ncbi request reprint Organizing literature information for clinical decision support
    Dina Demner-Fushman
    Communications Engineering Branch, Lister Hill National Center for Biomedical Communications, National Library of Medicine, NIH DHHS, Bethesda, MD 20894, USA
    Stud Health Technol Inform 107:602-6. 2004
    ..We study two clustering algorithms and two methods of labeling document clusters...
  6. pmc What can natural language processing do for clinical decision support?
    Dina Demner-Fushman
    U S National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    J Biomed Inform 42:760-72. 2009
    ..The current solutions to challenges posed by distinct sublanguages, intended user groups, and support goals are discussed...
  7. pmc Annotation and retrieval of clinically relevant images
    Dina Demner-Fushman
    Communications Engineering Branch, Lister Hill National Center for Biomedical Communications, US National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Int J Med Inform 78:e59-67. 2009
    ..Our second goal is to find promising approaches for providing clinical evidence at the point of service, leveraging information contained in the text and images...
  8. ncbi request reprint PubMed on Tap: discovering design principles for online information delivery to handheld computers
    Susan E Hauser
    Communications Engineering Branch, Lister Hill National Center for Biomedical Communications, NLM, NIH, Bethesda, MD 20894, USA
    Stud Health Technol Inform 107:1430-3. 2004
    ..Continued research is expected to discover additional user interface design principles as well as guidelines for results organization and system performance..
  9. pmc Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation
    Marcelo Fiszman
    National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bldg 38A, Rm B1N 28J, Bethesda, MD 20894, USA
    J Biomed Inform 42:801-13. 2009
    ..The automatic summarization system significantly outperformed the baseline in both metrics. The MAP gain was 0.17 (p<0.01) and the increase in the overall score of clinical usefulness was 0.39 (p<0.05)...
  10. pmc Comparison and combination of several MeSH indexing approaches
    Antonio José Jimeno Yepes
    NICTA Victoria Research Lab, Melbourne VIC 3010, Australia National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA
    AMIA Annu Symp Proc 2013:709-18. 2013
    ..We find that when we combine the MTI suggestions and the prediction of the learning algorithms, the performance improves compared to any single method for most of the evaluated MeSH headings. ..
  11. pmc Using wireless handheld computers to seek information at the point of care: an evaluation by clinicians
    Susan E Hauser
    Lister Hill National Center for Biomedical Communications, National Library of Information, 8600 Rockville Pike, Bethesda, MD 20894, USA
    J Am Med Inform Assoc 14:807-15. 2007
    ..To evaluate: (1) the effectiveness of wireless handheld computers for online information retrieval in clinical settings; (2) the role of MEDLINE in answering clinical questions raised at the point of care...
  12. pmc Mining MEDLINE for problems associated with vitamin D
    Dina Demner-Fushman
    Lister Hill National Center for Biomedical Communications, U S National Library of Medicine, National Institutes of Health, DHHS, Bethesda, MD
    AMIA Annu Symp Proc 2013:300-8. 2013
    ..Although our relation extraction achieved 83.6% recall and 92.8% precision, only half of the disorders of interest participated in these relations. ..
  13. pmc Essie: a concept-based search engine for structured biomedical text
    Nicholas C Ide
    Lister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20894, USA
    J Am Med Inform Assoc 14:253-63. 2007
    ..Essie shows that a judicious combination of exploiting document structure, phrase searching, and concept based query expansion is a useful approach for information retrieval in the biomedical domain...
  14. pmc Extracting Rx information from clinical narrative
    James G Mork
    US National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
    J Am Med Inform Assoc 17:536-9. 2010
    ....
  15. pmc Towards the creation of a visual ontology of biomedical imaging entities
    Matthew S Simpson
    Lister Hill National Center for Biomedical Communications, U S National Library of Medicine, Bethesda, MD, USA
    AMIA Annu Symp Proc 2012:866-75. 2012
    ..Our results for thoracic imaging terms show that our methods are promising first steps towards the creation of a biomedical visual ontology...
  16. pmc Window classification of brain CT images in biomedical articles
    Zhiyun Xue
    National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA
    AMIA Annu Symp Proc 2012:1023-9. 2012
    ..Due to the inherent large variations of images among articles, it is important that the proposed method is robust. Our algorithm attained 90% accuracy in classifying images as bone window or non-bone window in a 210 image data set...
  17. pmc Knowledge-based methods to help clinicians find answers in MEDLINE
    Charles A Sneiderman
    National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA
    J Am Med Inform Assoc 14:772-80. 2007
    ..This article explores whether a hybrid approach of augmenting traditional information retrieval with knowledge-based methods facilitates finding practical clinical advice in the research literature...
  18. pmc A simple method to extract key maternal data from neonatal clinical notes
    Swapna Abhyankar
    National Library of Medicine, Bethesda, MD
    AMIA Annu Symp Proc 2013:2-9. 2013
    ..91-0.99 and precision of 0.95-1.0 for the 289 infants in our study. Our methods could be used with other research datasets and with clinical documentation systems to extract maternal data into a more useful, structured format. ..
  19. pmc Extracting drug indication information from structured product labels using natural language processing
    Kin Wah Fung
    Lister Hill National Center for Biomedical Communications, National Library of Medicine, US National Institutes of Health, Bethesda, MD 20894, USA
    J Am Med Inform Assoc 20:482-8. 2013
    ..To extract drug indications from structured drug labels and represent the information using codes from standard medical terminologies...
  20. pmc Standardizing clinical laboratory data for secondary use
    Swapna Abhyankar
    Lister Hill National Center for Biomedical Communications, National Library of Medicine, 8600 Rockville Pike, Building 38A 7N707, Bethesda, MD 20894, USA
    J Biomed Inform 45:642-50. 2012
    ..We have delivered this work to the MIMIC-II researchers, who have included it in their standard MIMIC-II database release so that researchers who use this database in the future will not have to do this work...
  21. pmc A mutation-centric approach to identifying pharmacogenomic relations in text
    Bastien Rance
    National Library of Medicine, Bethesda, MD 20894, USA
    J Biomed Inform 45:835-41. 2012
    ..To explore the notion of mutation-centric pharmacogenomic relation extraction and to evaluate our approach against reference pharmacogenomic relations...
  22. ncbi request reprint Continual development of a personalized decision support system
    Dina Demner-Fushman
    U S National Library of Medicine, NIH, Bethesda, MD, USA
    Stud Health Technol Inform 192:175-9. 2013
    ..Since its deployment in August 2009, the Evidence-Based Practice InfoBot (EBP InfoBot) system is in daily use at the NIH Clinical Center and responds to 21 requests a day, on average. ..
  23. pmc Evaluating the Importance of Image-related Text for Ad-hoc and Case-based Biomedical Article Retrieval
    Matthew S Simpson
    Lister Hill National Center for Biomedical Communications, U S National Library of Medicine, Bethesda, MD 20894
    AMIA Annu Symp Proc 2010:752-6. 2010
    ..This suggests that visual evidence is more relevant for the case descriptions used in our study than the clinical questions...
  24. ncbi request reprint A usability study of the PubMed on Tap user interface for PDAs
    Gregory Alexander
    Department of Health Management and Informatics, Sinclair School of Nursing, University of Missouri, Columbia, USA
    Stud Health Technol Inform 107:1411-5. 2004
    ..However, there was room for improvement in the navigational and functional characteristics, such as placing labels on icons, which affected the users' ability to use the research tool...