Yiming Bao

Summary

Affiliation: National Institutes of Health
Country: USA

Publications

  1. pmc FLAN: a web server for influenza virus genome annotation
    Yiming Bao
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Nucleic Acids Res 35:W280-4. 2007
  2. pmc The influenza virus resource at the National Center for Biotechnology Information
    Yiming Bao
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA
    J Virol 82:596-601. 2008
  3. pmc PAirwise Sequence Comparison (PASC) and its application in the classification of filoviruses
    Yiming Bao
    National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD 20892, USA
    Viruses 4:1318-27. 2012
  4. pmc Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop
    James Rodney Brister
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA E Mails Y B W K T T
    Viruses 2:2258-68. 2010
  5. pmc Virus Variation Resource--recent updates and future directions
    J Rodney Brister
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Nucleic Acids Res 42:D660-5. 2014
  6. pmc Virus variation resources at the National Center for Biotechnology Information: dengue virus
    Wolfgang Resch
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA
    BMC Microbiol 9:65. 2009
  7. pmc Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation
    Leonid Zaslavsky
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    BMC Bioinformatics 9:237. 2008
  8. pmc Nomenclature- and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014
    Jens H Kuhn
    Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA
    Viruses 6:4760-99. 2014
  9. pmc Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification
    Yiming Bao
    National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD, 20894, USA
    Arch Virol 159:3293-304. 2014
  10. pmc NCBI viral genomes resource
    J Rodney Brister
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Nucleic Acids Res 43:D571-7. 2015

Collaborators

Detail Information

Publications14

  1. pmc FLAN: a web server for influenza virus genome annotation
    Yiming Bao
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Nucleic Acids Res 35:W280-4. 2007
    ..A message showing the length of the input sequence, the predicted virus type, segment and subtype for the hemagglutinin and neuraminidase segments of Influenza A virus will also be displayed...
  2. pmc The influenza virus resource at the National Center for Biotechnology Information
    Yiming Bao
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA
    J Virol 82:596-601. 2008
  3. pmc PAirwise Sequence Comparison (PASC) and its application in the classification of filoviruses
    Yiming Bao
    National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD 20892, USA
    Viruses 4:1318-27. 2012
    ..The tool can compare new genome sequences of filoviruses with the ones already in the database, and propose their taxonomic classification...
  4. pmc Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop
    James Rodney Brister
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA E Mails Y B W K T T
    Viruses 2:2258-68. 2010
    ..This report describes the issues involved in viral genome annotation and reviews policy recommendations presented at the NCBI Annotation Workshop...
  5. pmc Virus Variation Resource--recent updates and future directions
    J Rodney Brister
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Nucleic Acids Res 42:D660-5. 2014
    ..Together these enhancements should support enhanced usability and the inclusion of new viruses in the future. ..
  6. pmc Virus variation resources at the National Center for Biotechnology Information: dengue virus
    Wolfgang Resch
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA
    BMC Microbiol 9:65. 2009
    ..Thus far, there has not been a comprehensive database for dengue virus, a significant public health threat...
  7. pmc Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation
    Leonid Zaslavsky
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    BMC Bioinformatics 9:237. 2008
    ..Enhanced visualization tools are required to represent results of the exploratory analysis on the web in an easy-to-comprehend form and to facilitate convenient information retrieval...
  8. pmc Nomenclature- and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014
    Jens H Kuhn
    Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA
    Viruses 6:4760-99. 2014
    ....
  9. pmc Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification
    Yiming Bao
    National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD, 20894, USA
    Arch Virol 159:3293-304. 2014
    ..PASC eliminates potential discrepancies in the results caused by different algorithms and/or different data used by researchers...
  10. pmc NCBI viral genomes resource
    J Rodney Brister
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
    Nucleic Acids Res 43:D571-7. 2015
    ..This, in turn, has placed increased emphasis on leveraging the knowledge of individual scientific communities to identify important viral sequences and develop well annotated reference virus genome sets. ..
  11. pmc Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names
    Jens H Kuhn
    Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA
    Viruses 6:3663-82. 2014
    ....
  12. pmc National center for biotechnology information viral genomes project
    Yiming Bao
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA
    J Virol 78:7291-8. 2004
  13. ncbi request reprint Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution
    Elodie Ghedin
    The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, Maryland 20850, USA
    Nature 437:1162-6. 2005
    ..All data from this project are being deposited, without delay, in public archives...
  14. ncbi request reprint The Tobacco mosaic virus 126-kDa protein associated with virus replication and movement suppresses RNA silencing
    Xin Shun Ding
    Plant Biology Division, The Samuel Roberts Noble Foundation, Inc, 2510 Sam Noble Parkway, Ardmore, OK 73402, USA
    Mol Plant Microbe Interact 17:583-92. 2004
    ..Based on these results and the known synergies between TMV and other viruses, the mechanism of suppression by the 126-kDa protein is compared with those utilized by other originally characterized suppressors of RNA silencing...