Allan Peter Davis

Summary

Affiliation: Mount Desert Island Biological Laboratory
Country: USA

Publications

  1. pmc DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Bioinformation 7:154-6. 2011
  2. pmc MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Database (Oxford) 2012:bar065. 2012
  3. pmc The Comparative Toxicogenomics Database: update 2011
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Nucleic Acids Res 39:D1067-72. 2011
  4. pmc Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Nucleic Acids Res 37:D786-92. 2009
  5. pmc The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Database (Oxford) 2011:bar034. 2011
  6. pmc A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions
    Allan Peter Davis
    Department of Biological Sciences, 3510 Thomas Hall, North Carolina State University, Raleigh, NC 27695 7617, USA, Computational Sciences Center of Emphasis, 200 CambridgePark Drive, Pfizer Inc, Cambridge, MA 02139, USA, Department of Bioinformatics, P O Box 35, Old Bar Harbor Road, MDI Biological Laboratory, Salisbury Cove, ME 04672, USA, Compound Safety Prediction, MS 8118 B3, Eastern Point Road, Pfizer Inc, Groton, CT 06340, USA, Computational Sciences Center of Emphasis, Pfizer Inc, Ramsgate Road, Sandwich, Kent CT13 9NJ, UK, Computational Sciences Center of Emphasis, 558 Eastern Point Road, Pfizer Inc, Groton, CT 06340, USA and Drug Safety Research and Development, 558 Eastern Point Road, Pfizer Inc, Groton, CT 06340, USA
    Database (Oxford) 2013:bat080. 2013
  7. pmc The Comparative Toxicogenomics Database: update 2013
    Allan Peter Davis
    Department of Biology, North Carolina State University, Raleigh, NC 27695 7617, USA
    Nucleic Acids Res 41:D1104-14. 2013
  8. pmc Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)
    Thomas C Wiegers
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME, USA
    BMC Bioinformatics 10:326. 2009
  9. pmc The comparative toxicogenomics database: a cross-species resource for building chemical-gene interaction networks
    Carolyn J Mattingly
    Department of Bioinformatics, Mount Desert Island Biological Laboratory, Salisbury Cove, Maine 04672, USA
    Toxicol Sci 92:587-95. 2006

Detail Information

Publications11

  1. pmc DiseaseComps: a metric that discovers similar diseases based upon common toxicogenomic profiles at CTD
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Bioinformation 7:154-6. 2011
    ..AVAILABILITY: The database is available for free at http://ctd.mdibl.org/..
  2. pmc MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Database (Oxford) 2012:bar065. 2012
    ..DATABASE URL: http://ctd.mdibl.org/voc.go?type=disease...
  3. pmc The Comparative Toxicogenomics Database: update 2011
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Nucleic Acids Res 39:D1067-72. 2011
    ..Together, this wealth of expanded chemical-gene-disease data continues to help users generate testable hypotheses about the molecular mechanisms of environmental diseases. CTD is freely available at http://ctd.mdibl.org...
  4. pmc Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Nucleic Acids Res 37:D786-92. 2009
    ..This wealth of chemical-gene-disease information yields testable hypotheses for understanding the effects of environmental chemicals on human health. CTD is freely available at http://ctd.mdibl.org...
  5. pmc The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database
    Allan Peter Davis
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA
    Database (Oxford) 2011:bar034. 2011
    ..We have incorporated this strategy into a web-based curation tool to further increase efficiency and productivity, implement quality control in real-time and accommodate biocurators working remotely. Database URL: http://ctd.mdibl.org...
  6. pmc A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions
    Allan Peter Davis
    Department of Biological Sciences, 3510 Thomas Hall, North Carolina State University, Raleigh, NC 27695 7617, USA, Computational Sciences Center of Emphasis, 200 CambridgePark Drive, Pfizer Inc, Cambridge, MA 02139, USA, Department of Bioinformatics, P O Box 35, Old Bar Harbor Road, MDI Biological Laboratory, Salisbury Cove, ME 04672, USA, Compound Safety Prediction, MS 8118 B3, Eastern Point Road, Pfizer Inc, Groton, CT 06340, USA, Computational Sciences Center of Emphasis, Pfizer Inc, Ramsgate Road, Sandwich, Kent CT13 9NJ, UK, Computational Sciences Center of Emphasis, 558 Eastern Point Road, Pfizer Inc, Groton, CT 06340, USA and Drug Safety Research and Development, 558 Eastern Point Road, Pfizer Inc, Groton, CT 06340, USA
    Database (Oxford) 2013:bat080. 2013
    ..Database URL: http://ctdbase.org/..
  7. pmc The Comparative Toxicogenomics Database: update 2013
    Allan Peter Davis
    Department of Biology, North Carolina State University, Raleigh, NC 27695 7617, USA
    Nucleic Acids Res 41:D1104-14. 2013
    ..Together, this wealth of expanded chemical-gene-disease data, combined with novel ways to analyze and view content, continues to help users generate testable hypotheses about the molecular mechanisms of environmental diseases...
  8. pmc Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)
    Thomas C Wiegers
    Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME, USA
    BMC Bioinformatics 10:326. 2009
    ....
  9. pmc The comparative toxicogenomics database: a cross-species resource for building chemical-gene interaction networks
    Carolyn J Mattingly
    Department of Bioinformatics, Mount Desert Island Biological Laboratory, Salisbury Cove, Maine 04672, USA
    Toxicol Sci 92:587-95. 2006
    ..Here we describe these new features and our novel cross-species curation of chemical-gene and chemical-protein interactions...