Ranjit Kumar

Summary

Affiliation: Mississippi State University
Country: USA

Publications

  1. pmc HPIDB--a unified resource for host-pathogen interactions
    Ranjit Kumar
    College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 11:S16. 2010
  2. doi TAAPP: Tiling Array Analysis Pipeline for Prokaryotes
    Ranjit Kumar
    College of Veterinary Medicine, Mississippi State University, MS 39762, USA
    Genomics Proteomics Bioinformatics 9:56-62. 2011
  3. pmc Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213
    Joseph S Reddy
    College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 13:S4. 2012
  4. pmc Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays
    Ranjit Kumar
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Genomics 11:350. 2010
  5. pmc AgBase: supporting functional modeling in agricultural organisms
    Fiona M McCarthy
    Department of Basic Sciences, College of Veterinary Medicine, PO Box 6100, Mississippi State University, MS 39762, USA
    Nucleic Acids Res 39:D497-506. 2011
  6. pmc RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336"
    Ranjit Kumar
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 7:e29435. 2012
  7. pmc Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions
    Debarati Paul
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 6:e17111. 2011
  8. pmc Ultrasonic incisions produce less inflammatory mediator response during early healing than electrosurgical incisions
    Bindu Nanduri
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 8:e73032. 2013
  9. pmc An automated proteomic data analysis workflow for mass spectrometry
    Ken Pendarvis
    Institute for Digital Biology, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 10:S17. 2009
  10. pmc Facilitating functional annotation of chicken microarray data
    Teresia J Buza
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 10:S2. 2009

Detail Information

Publications10

  1. pmc HPIDB--a unified resource for host-pathogen interactions
    Ranjit Kumar
    College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 11:S16. 2010
    ..Database resources for studying host-pathogen systems are scarce and are either host specific or dedicated to specific pathogens...
  2. doi TAAPP: Tiling Array Analysis Pipeline for Prokaryotes
    Ranjit Kumar
    College of Veterinary Medicine, Mississippi State University, MS 39762, USA
    Genomics Proteomics Bioinformatics 9:56-62. 2011
    ..The implemented workflow is microarray platform independent and is presented as a web-based service. The web interface is freely available for academic use at http://lims.lsbi.mafes.msstate.edu/TAAPP-HTML/...
  3. pmc Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213
    Joseph S Reddy
    College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 13:S4. 2012
    ..The aim was to identify previously unannotated regions of the genome using RNA-Seq based expression profile to complement the existing annotation of this pathogen...
  4. pmc Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays
    Ranjit Kumar
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Genomics 11:350. 2010
    ..Tiling microarrays enable genome wide mRNA profiling as well as identification of novel transcripts at a high-resolution...
  5. pmc AgBase: supporting functional modeling in agricultural organisms
    Fiona M McCarthy
    Department of Basic Sciences, College of Veterinary Medicine, PO Box 6100, Mississippi State University, MS 39762, USA
    Nucleic Acids Res 39:D497-506. 2011
    ..Moreover, we provide comprehensive training resources (including worked examples and tutorials) via links to Educational Resources at the AgBase website...
  6. pmc RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336"
    Ranjit Kumar
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 7:e29435. 2012
    ..This observation suggests that a number of the newly identified sRNAs in strain 2336 may be involved in strain-specific adaptations...
  7. pmc Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions
    Debarati Paul
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 6:e17111. 2011
    ..We found that adaptation to chemolithoautotrophic growth involved adaptations in cell envelope, oxidative homeostasis, and metabolic pathways such as glyoxylate shunt and amino acid/cofactor biosynthetic enzymes...
  8. pmc Ultrasonic incisions produce less inflammatory mediator response during early healing than electrosurgical incisions
    Bindu Nanduri
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 8:e73032. 2013
    ..In agreement with clinical observations, electrosurgery was shown to incur a greater inflammatory immune response than an ultrasonic device during initial iatrogenic wound healing. ..
  9. pmc An automated proteomic data analysis workflow for mass spectrometry
    Ken Pendarvis
    Institute for Digital Biology, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 10:S17. 2009
    ....
  10. pmc Facilitating functional annotation of chicken microarray data
    Teresia J Buza
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 10:S2. 2009
    ..This costs researchers amount of time in searching multiple GO databases for functional information...