Shane C Burgess

Summary

Affiliation: Mississippi State University
Country: USA

Publications

  1. pmc An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation
    Gregory P Harhay
    USDA ARS US Meat Animal Research Center, State Spur 18 D, Clay Center, NE 68901, USA
    Genome Biol 11:R102. 2010
  2. pmc Identification of the neoplastically transformed cells in Marek's disease herpesvirus-induced lymphomas: recognition by the monoclonal antibody AV37
    Shane C Burgess
    Division of Immunology and Pathology, Institute for Animal Health, Compton, United Kingdom
    J Virol 76:7276-92. 2002
  3. pmc Marek's disease is a natural model for lymphomas overexpressing Hodgkin's disease antigen (CD30)
    S C Burgess
    Department of Basic Science, College of Veterinary Medicine, Mississippi State University, P O Box 1600, Mississippi State, MS 39762 6100, USA
    Proc Natl Acad Sci U S A 101:13879-84. 2004
  4. ncbi Proteomics in the chicken: tools for understanding immune responses to avian diseases
    S C Burgess
    Department of Basic Sciences, Mississippi State University, College of Veterinary Medicine, PO Box 6100, Mississippi State, Mississippi 39762 6100, USA
    Poult Sci 83:552-73. 2004
  5. pmc Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays
    Ranjit Kumar
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Genomics 11:350. 2010
  6. pmc ProtQuant: a tool for the label-free quantification of MudPIT proteomics data
    Susan M Bridges
    Department of Computer Science and Engineering, Mississippi State University, Starkville, MS 39762, USA
    BMC Bioinformatics 8:S24. 2007
  7. pmc The proteogenomic mapping tool
    William S Sanders
    Department of Computer Science and Engineering, Mississippi State University, MS, USA
    BMC Bioinformatics 12:115. 2011
  8. pmc Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213
    Joseph S Reddy
    College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 13:S4. 2012
  9. pmc Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5
    Debarati Paul
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, USA
    BMC Genomics 11:511. 2010
  10. pmc AgBase: supporting functional modeling in agricultural organisms
    Fiona M McCarthy
    Department of Basic Sciences, College of Veterinary Medicine, PO Box 6100, Mississippi State University, MS 39762, USA
    Nucleic Acids Res 39:D497-506. 2011

Detail Information

Publications73

  1. pmc An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation
    Gregory P Harhay
    USDA ARS US Meat Animal Research Center, State Spur 18 D, Clay Center, NE 68901, USA
    Genome Biol 11:R102. 2010
    ..We present an atlas of RNA abundance for 92 adult, juvenile and fetal cattle tissues and three cattle cell lines...
  2. pmc Identification of the neoplastically transformed cells in Marek's disease herpesvirus-induced lymphomas: recognition by the monoclonal antibody AV37
    Shane C Burgess
    Division of Immunology and Pathology, Institute for Animal Health, Compton, United Kingdom
    J Virol 76:7276-92. 2002
    ..Identification of the neoplastically transformed cells in MD facilitates a detailed understanding of MD pathogenesis and also improves the utility of MD as a general model for herpesvirus oncology...
  3. pmc Marek's disease is a natural model for lymphomas overexpressing Hodgkin's disease antigen (CD30)
    S C Burgess
    Department of Basic Science, College of Veterinary Medicine, Mississippi State University, P O Box 1600, Mississippi State, MS 39762 6100, USA
    Proc Natl Acad Sci U S A 101:13879-84. 2004
    ..Specific anti-CD30 Igs occurred after infection of genetically MD-resistant chickens with oncogenic MDV, suggesting immunity to CD30 could play a role in MD lymphoma regression...
  4. ncbi Proteomics in the chicken: tools for understanding immune responses to avian diseases
    S C Burgess
    Department of Basic Sciences, Mississippi State University, College of Veterinary Medicine, PO Box 6100, Mississippi State, Mississippi 39762 6100, USA
    Poult Sci 83:552-73. 2004
    ..Our trials and tribulations in establishing our proteomics program, as well some of our initial data to understand chicken immune system function, will be discussed...
  5. pmc Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays
    Ranjit Kumar
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Genomics 11:350. 2010
    ..Tiling microarrays enable genome wide mRNA profiling as well as identification of novel transcripts at a high-resolution...
  6. pmc ProtQuant: a tool for the label-free quantification of MudPIT proteomics data
    Susan M Bridges
    Department of Computer Science and Engineering, Mississippi State University, Starkville, MS 39762, USA
    BMC Bioinformatics 8:S24. 2007
    ..We describe ProtQuant, a Java-based tool for label-free protein quantification that uses the previously published SigmaXCorr method for quantification and includes an improved method for handling missing data...
  7. pmc The proteogenomic mapping tool
    William S Sanders
    Department of Computer Science and Engineering, Mississippi State University, MS, USA
    BMC Bioinformatics 12:115. 2011
    ..Previously, the tools to do this have been limited to custom scripts designed by individual research groups to analyze their own data, are generally not widely available, and do not scale well with large eukaryotic genomes...
  8. pmc Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213
    Joseph S Reddy
    College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 13:S4. 2012
    ..The aim was to identify previously unannotated regions of the genome using RNA-Seq based expression profile to complement the existing annotation of this pathogen...
  9. pmc Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5
    Debarati Paul
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, USA
    BMC Genomics 11:511. 2010
    ..We previously published the draft genome of this organism and recently submitted the complete genome sequence to GenBank...
  10. pmc AgBase: supporting functional modeling in agricultural organisms
    Fiona M McCarthy
    Department of Basic Sciences, College of Veterinary Medicine, PO Box 6100, Mississippi State University, MS 39762, USA
    Nucleic Acids Res 39:D497-506. 2011
    ..Moreover, we provide comprehensive training resources (including worked examples and tutorials) via links to Educational Resources at the AgBase website...
  11. pmc Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions
    Debarati Paul
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 6:e17111. 2011
    ..We found that adaptation to chemolithoautotrophic growth involved adaptations in cell envelope, oxidative homeostasis, and metabolic pathways such as glyoxylate shunt and amino acid/cofactor biosynthetic enzymes...
  12. pmc AgBase: a unified resource for functional analysis in agriculture
    Fiona M McCarthy
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, PO Box 6100, Mississippi, MS 39762, USA
    Nucleic Acids Res 35:D599-603. 2007
    ..We encourage and publicly acknowledge GO annotations from researchers and provide an online mechanism for agricultural researchers to submit requests for GO annotations...
  13. pmc Re-annotation is an essential step in systems biology modeling of functional genomics data
    Bart H J van den Berg
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Starkville, Mississippi, United States of America
    PLoS ONE 5:e10642. 2010
    ..We propose that, because of this, re-annotation should be considered to be an essential first step for deriving value from functional genomics data...
  14. doi Gene model detection using mass spectrometry
    Bindu Nanduri
    College of Veterinary Medicine, Mississippi State University, Starkville, Mississippi State, USA
    Methods Mol Biol 604:137-44. 2010
    ..We also describe our proteogenomic mapping pipeline - a set of computational tools that automate the proteogenomic annotation work flow. This pipeline is available for download at www.agbase.msstate.edu/tools/ ...
  15. pmc Facilitating functional annotation of chicken microarray data
    Teresia J Buza
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 10:S2. 2009
    ..This costs researchers amount of time in searching multiple GO databases for functional information...
  16. pmc Gene Ontology annotation quality analysis in model eukaryotes
    Teresia J Buza
    Department of Basic Sciences, Mississippi State University, Mississippi 39762, USA
    Nucleic Acids Res 36:e12. 2008
    ..The GAQ score also allows researchers to quantitatively assess the functional data available for their experimental systems (arrays or databases)...
  17. doi Proteomic expression profiles of virulent and avirulent strains of Listeria monocytogenes isolated from macrophages
    Janet R Donaldson
    Department of Biological Sciences, Mississippi State University, Mississippi State, MS, USA
    J Proteomics 74:1906-17. 2011
    ..monocytogenes strains during intracellular growth in macrophages, we were able to detect biological differences that may determine the ability of L. monocytogenes to survive in macrophages...
  18. doi TAAPP: Tiling Array Analysis Pipeline for Prokaryotes
    Ranjit Kumar
    College of Veterinary Medicine, Mississippi State University, MS 39762, USA
    Genomics Proteomics Bioinformatics 9:56-62. 2011
    ..The implemented workflow is microarray platform independent and is presented as a web-based service. The web interface is freely available for academic use at http://lims.lsbi.mafes.msstate.edu/TAAPP-HTML/...
  19. pmc Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome
    Teresia J Buza
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Genomics 8:425. 2007
    ..However, the sequence data currently available is poorly structurally and functionally annotated and many genes do not have standard nomenclature assigned...
  20. doi Sequential detergent extraction prior to mass spectrometry analysis
    Fiona M McCarthy
    Department of Basic Sciences, Mississippi State University, MS 39762, USA
    Methods Mol Biol 528:110-8. 2009
    ..Since sequential detergent extraction (SDE) separates proteins based upon their physicochemistry and sub-cellular localisation, this method also provides useful data about cellular localisation...
  21. pmc Proteomics-based systems biology modeling of bovine germinal vesicle stage oocyte and cumulus cell interaction
    Divyaswetha Peddinti
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, USA
    PLoS ONE 5:e11240. 2010
    ..However, despite its importance, little is known about the molecular events and pathways involved in this bidirectional communication...
  22. pmc Ultrasonic incisions produce less inflammatory mediator response during early healing than electrosurgical incisions
    Bindu Nanduri
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 8:e73032. 2013
    ..In agreement with clinical observations, electrosurgery was shown to incur a greater inflammatory immune response than an ultrasonic device during initial iatrogenic wound healing. ..
  23. pmc Nuclear Factor kappa B is central to Marek's disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo
    Shyamesh Kumar
    Department of Pathobiology and Population Medicine, Mississippi State University, MS 39762, USA
    BMC Syst Biol 6:123. 2012
    ....
  24. pmc RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336"
    Ranjit Kumar
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 7:e29435. 2012
    ..This observation suggests that a number of the newly identified sRNAs in strain 2336 may be involved in strain-specific adaptations...
  25. pmc Prediction of peptides observable by mass spectrometry applied at the experimental set level
    William S Sanders
    Department of Biochemistry and Molecular Biology, Mississippi State University, MS, USA
    BMC Bioinformatics 8:S23. 2007
    ....
  26. pmc Accelerating string set matching in FPGA hardware for bioinformatics research
    Yoginder S Dandass
    Institute of Digital Biology, Mississippi State University, Mississippi 39762, USA
    BMC Bioinformatics 9:197. 2008
    ....
  27. pmc GOModeler--a tool for hypothesis-testing of functional genomics datasets
    Prashanti Manda
    Department of Computer Science and Engineering, Mississippi State University, MS, USA
    BMC Bioinformatics 11:S29. 2010
    ..The design of the tool allows the user to complement the functional information in the GO with his/her domain specific expertise for comprehensive hypothesis testing...
  28. pmc ArrayIDer: automated structural re-annotation pipeline for DNA microarrays
    Bart Hj van den Berg
    Department of Basic Science, PO Box 6100, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 10:30. 2009
    ....
  29. ncbi Modeling a whole organ using proteomics: the avian bursa of Fabricius
    Fiona M McCarthy
    Department of Basic Science, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762 6100, USA
    Proteomics 6:2759-71. 2006
    ..Finally, we have developed a novel method for facilitating structural annotation, "expressed peptide sequence tags" (ePSTs) and demonstrate its utility by identifying 521 potential novel proteins from the chicken "unassigned chromosome"...
  30. ncbi Modeling the proteome of a Marek's disease transformed cell line: a natural animal model for CD30 overexpressing lymphomas
    Joram J Buza
    College of Veterinary Medicine, Mississippi State, MS 39762, USA
    Proteomics 7:1316-26. 2007
    ..The cytokines, cytokine receptors, and their related proteins suggest that UA-01 has a regulatory T-cell phenotype...
  31. ncbi Cyclic strain regulates pro-inflammatory protein expression in porcine aortic valve endothelial cells
    Scott A Metzler
    Department of Agricultural and Biological Engineering, Mississippi State University, Mississippi State, MS 39762 9632, USA
    J Heart Valve Dis 17:571-7; discussion 578. 2008
    ..The study aim was to determine if mechanical forces were responsible for the pro-inflammatory reaction in aortic valve endothelial cells...
  32. pmc Structural and functional-annotation of an equine whole genome oligoarray
    Lauren A Bright
    Department of Clinical Sciences, College of Veterinary Medicine, Mississippi State University, PO Box 6100, Mississippi State, MS, 39762, USA
    BMC Bioinformatics 10:S8. 2009
    ..The Gene Ontology (GO) is the de facto standard for functional annotation, and is routinely used as a basis for modelling and hypothesis testing, large functional genomics datasets...
  33. pmc An automated proteomic data analysis workflow for mass spectrometry
    Ken Pendarvis
    Institute for Digital Biology, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Bioinformatics 10:S17. 2009
    ....
  34. pmc Introduction to the proceedings of the Avian Genomics and Gene Ontology Annotation Workshop
    Susan M Bridges
    Department of Computer Science and Engineering, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Genomics 10:I1. 2009
    ..These manuscripts address issues ranging from the poultry industry view of USDA genomics policy to the genomics of a wide variety of Archeosaur species including chicken, duck, alligator, and condors and their pathogens...
  35. ncbi Infection of macrophages by a lymphotropic herpesvirus: a new tropism for Marek's disease virus
    Alexander D Barrow
    Viral Oncogenesis Group, Institute for Animal Health, Compton, Berkshire RG20 7NN, UK
    J Gen Virol 84:2635-45. 2003
    ....
  36. ncbi Non-electrophoretic differential detergent fractionation proteomics using frozen whole organs
    Bart H J van den Berg
    College of Veterinary Medicine, PO Box 6100, Mississippi State University, MS 39762 6100, USA
    Rapid Commun Mass Spectrom 21:3905-9. 2007
    ..In addition, we were able to assign 'biological process' Gene Ontology (GO) annotations, which will facilitate systems biological modeling of our proteomics data...
  37. pmc Genome sequence of the solvent-producing bacterium Clostridium carboxidivorans strain P7T
    Debarati Paul
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, USA
    J Bacteriol 192:5554-5. 2010
    ..The C. carboxidivorans genome contains all the genes for the carbonyl branch of the Wood-Ljungdahl pathway for CO(2) fixation, and it encodes enzymes for conversion of acetyl coenzyme A into butanol and butyrate...
  38. ncbi Proteomic analysis using an unfinished bacterial genome: the effects of subminimum inhibitory concentrations of antibiotics on Mannheimia haemolytica virulence factor expression
    Bindu Nanduri
    College of Veterinary Medicine, Mississippi State University, Mississippi, MS 39762 6100, USA
    Proteomics 5:4852-63. 2005
    ..haemolytica virulence factor. Reduction in leukotoxin expression could be one of the molecular mechanisms responsible for the efficacy of these antibiotics against bovine respiratory disease...
  39. ncbi Effects of subminimum inhibitory concentrations of antibiotics on the Pasteurella multocida proteome
    Bindu Nanduri
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi 39762, USA
    J Proteome Res 5:572-80. 2006
    ..Potential compensatory mechanisms enabling antibiotic adaptation were identified, including increased RecA expression caused by enrofloxacin...
  40. pmc Transcriptome-based differentiation of closely-related Miscanthus lines
    Philippe Chouvarine
    Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 7:e29850. 2012
    ..We provide the first exome sequence database for Miscanthus species complete with Gene Ontology (GO) functional annotations...
  41. pmc Comprehensive proteomic analysis of bovine spermatozoa of varying fertility rates and identification of biomarkers associated with fertility
    Divyaswetha Peddinti
    Department of Basic Sciences, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Syst Biol 2:19. 2008
    ..A thorough understanding of these mechanisms is essential for obtaining consistently high reproductive efficiency and to ensure lower cost and time-loss by breeder...
  42. pmc The transcriptional response of Pasteurella multocida to three classes of antibiotics
    Bindu Nanduri
    College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Genomics 10:S4. 2009
    ..Biological modeling of the differentially expressed genes (DE) was conducted based on Clusters of Orthologous (COG) groups and network analysis in Pathway Studio...
  43. pmc Identifying blood biomarkers and physiological processes that distinguish humans with superior performance under psychological stress
    Amanda M Cooksey
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America
    PLoS ONE 4:e8371. 2009
    ..Some people are more resistant to this type of stress, and consequently better able to cope with the demands of naval aviation, than others...
  44. ncbi Differential detergent fractionation for non-electrophoretic eukaryote cell proteomics
    Fiona M McCarthy
    College of Veterinary Medicine, PO Box 6100, Mississippi State University, Mississippi 39762, USA
    J Proteome Res 4:316-24. 2005
    ..As more genome sequences are completed, methods which can aid in functional annotation will become increasingly important...
  45. pmc Comparative proteomic analysis of Listeria monocytogenes strains F2365 and EGD
    Janet R Donaldson
    Department of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA
    Appl Environ Microbiol 75:366-73. 2009
    ..monocytogenes strains. In particular, the strains differed in expression of proteins involved in cell wall physiology and flagellar biosynthesis, as well as DNA repair proteins and stress response proteins...
  46. doi Experimental annotation of channel catfish virus by probabilistic proteogenomic mapping
    Dusan Kunec
    College of Veterinary Medicine, Mississippi State, MS 39762, USA
    Proteomics 9:2634-47. 2009
    ..Most of these novel ORF encode small proteins (<100 amino acids). Directed, strand-specific reverse transcription real-time PCR confirmed RNA expression from 6/7 novel ATG-initiated ORF investigated...
  47. pmc Prediction of cell penetrating peptides by support vector machines
    William S Sanders
    Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi, United States of America
    PLoS Comput Biol 7:e1002101. 2011
    ..Of the synthesized peptides predicted to be CPPs, 100% of these peptides were shown to be penetrating...
  48. pmc An overlapping bacterial artificial chromosome system that generates vectorless progeny for channel catfish herpesvirus
    Dusan Kunec
    College of Veterinary Medicine, Box 6100, Mississippi State University, Mississippi State, MS 39762, USA
    J Virol 82:3872-81. 2008
    ..This is the first report of the generation of an infectious BAC clone of a member of the fish and amphibian herpesviruses and its use to generate recombinants...
  49. ncbi Bovine germinal vesicle oocyte and cumulus cell proteomics
    E Memili
    Department of Animal and Dairy Sciences, Mississippi State University, Starkville, Mississippi 39762 6100, USA
    Reproduction 133:1107-20. 2007
    ..Furthermore, some of these proteins may represent molecular biomarkers for developmental potential of oocytes...
  50. ncbi Assessment of dietary amino acid scarcity on growth and blood plasma proteome status of broiler chickens
    A Corzo
    Department of Poultry Science, College of Veterinary Medicine, Mississippi State University, Mississippi 39762, USA
    Poult Sci 84:419-25. 2005
    ..In conclusion, results herein illustrate the potential for using functional genomics in nutritionally related responses of poultry...
  51. doi The neoplastically transformed (CD30hi) Marek's disease lymphoma cell phenotype most closely resembles T-regulatory cells
    L A Shack
    Department of Basic Sciences, College of Veterinary Medicine, Wise Center, Mississippi State University, Spring Street, Box 6100, Mississippi State, MS 39762 6100, USA
    Cancer Immunol Immunother 57:1253-62. 2008
    ..Here were test the hypothesis that the CD30hi neoplastically transformed MD lymphoma cells have a phenotype more closely resembling T-helper (Th)-2 or regulatory T (T-reg) cells...
  52. ncbi Protein expression of pectoralis major muscle in chickens in response to dietary methionine status
    A Corzo
    Department of Poultry Science, Mississippi State University, MS 39762, USA
    Br J Nutr 95:703-8. 2006
    ....
  53. pmc Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa
    Juliet D Tang
    Forest Products, Mississippi State University, Mississippi State, Mississippi, USA
    Appl Environ Microbiol 78:2272-81. 2012
    ..radiculosa exhibited more similarity to Postia placenta than Serpula lacrymans. Notable differences were found, however, and their involvements in copper tolerance and wood decay are discussed...
  54. pmc AgBase: a functional genomics resource for agriculture
    Fiona M McCarthy
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    BMC Genomics 7:229. 2006
    ....
  55. doi Quantitative analysis of Streptococcus pneumoniae TIGR4 response to in vitro iron restriction by 2-D LC ESI MS/MS
    Bindu Nanduri
    College of Veterinary Medicine, Mississippi State University, MS 39762, USA
    Proteomics 8:2104-14. 2008
    ..The net effect of changes in all these biological processes could increase the virulence of S. pneumoniae TIGR4 during in vivo infection...
  56. doi Understanding animal viruses using the Gene Ontology
    Fiona M McCarthy
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    Trends Microbiol 17:328-35. 2009
    ..Here, we review how the GO is being used to model viral pathogenesis, with a focus on animal viruses...
  57. pmc Gene Profiling of Aortic Valve Interstitial Cells under Elevated Pressure Conditions: Modulation of Inflammatory Gene Networks
    James N Warnock
    Department of Agricultural and Biological Engineering, Mississippi State University, Mississippi State, MS 39762, USA
    Int J Inflam 2011:176412. 2011
    ..This system overview has detected key molecules that could be targeted for pharmacotherapy of aortic stenosis in hypertensive patients...
  58. pmc Global liver proteomics of rats exposed for 5 days to phenobarbital identifies changes associated with cancer and with CYP metabolism
    Mary B Dail
    Center for Environmental Health Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi 39762, USA
    Toxicol Sci 106:556-69. 2008
    ....
  59. pmc Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T
    Debarati Paul
    College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi 39762, USA
    J Bacteriol 190:5531-2. 2008
    ..It is also capable of heterotrophic growth under appropriate environmental conditions. Here we report the annotated genome sequence of the circular chromosome of this organism...
  60. pmc Expression of CD134 and CXCR4 mRNA in term placentas from FIV-infected and control cats
    Veronica L Scott
    Department of Biological Sciences, Mississippi State University, P O Box GY, Mississippi State, Mississippi 39762, United States
    Vet Immunol Immunopathol 123:90-6. 2008
    ..Thus, it appears that cells expressing these receptors may play a role in pregnancy maintenance...
  61. ncbi Resistance to Marek's disease herpesvirus-induced lymphoma is multiphasic and dependent on host genotype
    S C Burgess
    Division of Immunopathology, Institute for Animal Health, Compton, Newbury, Berks, UK
    Vet Pathol 38:129-42. 2001
    ..The rank order, determined by clinical signs and pathology, for MD susceptibility (highest to lowest) was 7(2) > 15I > 6(1) > N...
  62. doi A Gateway recombination herpesvirus cloning system with negative selection that produces vectorless progeny
    Dusan Kunec
    College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    J Virol Methods 155:82-6. 2009
    ..This system has broad utility and could be used to facilitate development of recombinant viruses, viral vectors and better vaccines...
  63. ncbi Effect of developmental exposure to chlorpyrifos on the expression of neurotrophin growth factors and cell-specific markers in neonatal rat brain
    Angela M Betancourt
    Center for Environmental Health Sciences, College of Veterinary Medicine, Mississippi State University, 39762, USA
    Toxicol Sci 92:500-6. 2006
    ....
  64. ncbi Differential immediate-early gene responses to elevated pressure in porcine aortic valve interstitial cells
    James N Warnock
    Agricultural and Biological Engineering, Mississippi State University, Box 9632, Mississippi State, MS 39762 9632, USA
    J Heart Valve Dis 15:34-41; discussion 42. 2006
    ..Hence, the expression of MCP-1, osteopontin (OPN), VCAM-1, GM-CSF and PAI-1 was examined using semi-quantitative real-time RT-PCR...
  65. ncbi Isoleucine needs of thirty- to forty-day-old female chickens: immunity
    L L Hale
    Department of Poultry Science, Mississippi State University, Mississippi State, Mississippi 39762 9665, USA
    Poult Sci 83:1979-85. 2004
    ..Although feeding broilers a diet deficient in Ile suppressed some immune criteria, it does not appear that a marginal Ile deficiency will compromise immunity in growing female broilers...
  66. ncbi In ovo DNA immunisation followed by a recombinant fowlpox boost is fully protective to challenge with virulent IBDV
    E A Haygreen
    Institute for Animal Health, Compton, Berkshire RG20 7NN, UK
    Vaccine 24:4951-61. 2006
    ..An antibody response was not detected after the prime-boost vaccination, even after chicks had been challenged with IBDV, implying that the DNA prime delivered in ovo stimulated a protective cellular immune response...
  67. ncbi Counting absolute numbers of specific leukocyte subpopulations in avian whole blood using a single-step flow cytometric technique: comparison of two inbred lines of chickens
    S C Burgess
    Institute for Animal Health, Compton, Newbury, Berkshire, UK
    J Immunol Methods 227:169-76. 1999
    ..Relative MHC class I expression increased with age in both lines...
  68. ncbi GOing from functional genomics to biological significance
    F M McCarthy
    Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
    Cytogenet Genome Res 117:278-87. 2007
    ..Not only will improved genomic annotation and tools to use these annotations benefit the chicken research community but they will also facilitate research in other avian species and comparative genomics...
  69. ncbi Placental immunopathology and pregnancy failure in the FIV-infected cat
    C C Weaver
    Department of Biological Sciences, Mississippi State University, Mississippi State, MS, USA
    Placenta 26:138-47. 2005
    ..Therefore, increased placental Th1 cytokine expression was associated with pregnancy failure in the FIV-infected cat...
  70. ncbi Interferon-containing supernatants increase Marek's disease herpesvirus genomes and gene transcription levels, but not virion replication in vitro
    Alon M Levy
    Hebrew University of Jerusalem, Faculty of Agriculture, Department of Animal Science, Rehovot, Israel
    Viral Immunol 16:501-9. 2003
    ..We propose MDV has evolved to increase specific gene transcription and genome copies per cell to compensate for ICS. We speculate that the bi-directional shared pp38/origin of replication promoter, is central to this mechanism...
  71. ncbi Major histocompatibility complex class I is downregulated in Marek's disease virus infected chicken embryo fibroblasts and corrected by chicken interferon
    Alon M Levy
    Department of Animal Science, Faculty of Agriculture, Hebrew University of Jerusalem, Rehovot, Israel
    Comp Immunol Microbiol Infect Dis 26:189-98. 2003
    ..Our results show that only an oncogenic serotype 1 strain of MDV (RB1B) was able to markedly decrease MHC class I expression, and that addition of IFN reversed this MDV effect...
  72. doi Different signaling pathways expressed by chicken naive CD4(+) T cells, CD4(+) lymphocytes activated with staphylococcal enterotoxin B, and those malignantly transformed by Marek's disease virus
    Joram J Buza
    Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, Canada
    J Proteome Res 7:2380-7. 2008
    ....
  73. ncbi Monocytosis is associated with the onset of leukocyte and viral infiltration of the brain in chickens infected with the very virulent Marek's disease virus strain C12/130
    Alexander D Barrow
    Viral Oncogenesis Group, Insitute for Animal Health, Compton, Berkshire, UK
    Avian Pathol 32:183-91. 2003
    ....