X Huang

Summary

Affiliation: Michigan Technological University
Country: USA

Publications

  1. pmc CAP3: A DNA sequence assembly program
    X Huang
    Department of Computer Science, Michigan Technological University, Houghton, Michigan 49931 USA
    Genome Res 9:868-77. 1999
  2. ncbi request reprint Methods for comparing a DNA sequence with a protein sequence
    X Huang
    Department of Computer Science, Michigan Technological University, Houghton 49931, USA
    Comput Appl Biosci 12:497-506. 1996
  3. ncbi request reprint A tool for analyzing and annotating genomic sequences
    X Huang
    Department of Computer Science, Michigan Technological University, Houghton 49931, USA
    Genomics 46:37-45. 1997

Collaborators

Detail Information

Publications3

  1. pmc CAP3: A DNA sequence assembly program
    X Huang
    Department of Computer Science, Michigan Technological University, Houghton, Michigan 49931 USA
    Genome Res 9:868-77. 1999
    ..PHRAP often produces longer contigs than CAP3 whereas CAP3 often produces fewer errors in consensus sequences than PHRAP. It is easier to construct scaffolds with CAP3 than with PHRAP on low-pass data with forward-reverse constraints...
  2. ncbi request reprint Methods for comparing a DNA sequence with a protein sequence
    X Huang
    Department of Computer Science, Michigan Technological University, Houghton 49931, USA
    Comput Appl Biosci 12:497-506. 1996
    ..The simplified versions of the methods were implemented as computer programs named NAP and LAP. The experimental results demonstrate that the programs are sensitive and powerful tools for finding genes by DNA-protein sequence homology...
  3. ncbi request reprint A tool for analyzing and annotating genomic sequences
    X Huang
    Department of Computer Science, Michigan Technological University, Houghton 49931, USA
    Genomics 46:37-45. 1997
    ..The AAT tool reduces the labor-intensive work of locating the exons of the query sequence and improves the process of defining intron-exon boundaries by using the wealth of available protein and cDNA data...