Daniel D Shoemaker

Summary

Affiliation: Merck Research Laboratories
Country: USA

Publications

  1. ncbi request reprint Recent developments in DNA microarrays
    Daniel D Shoemaker
    Rosetta Inpharmatics, 12040 115th Avenue North East, Kirkland, Washington 98034, USA
    Curr Opin Microbiol 5:334-7. 2002
  2. ncbi request reprint DNA helicase gene interaction network defined using synthetic lethality analyzed by microarray
    Siew Loon Ooi
    Department of Molecular Biology and Genetics, The Johns Hopkins University School of Medicine, 617 Hunterian Building, 725 North Wolfe Street, Baltimore, Maryland 21205, USA
    Nat Genet 35:277-86. 2003
  3. ncbi request reprint Microarray standard data set and figures of merit for comparing data processing methods and experiment designs
    Yudong D He
    Rosetta Inpharmatics Inc, 12 040 115th Avenue Northeast, Kirkland, WA 98034, USA
    Bioinformatics 19:956-65. 2003
  4. pmc Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing
    John Castle
    Rosetta Inpharmatics, Merck and Co, Inc, 12040 115th Ave NE, Kirkland, Washington 98034, USA
    Genome Biol 4:R66. 2003
  5. ncbi request reprint Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
    Jason M Johnson
    Rosetta Inpharmatics LLC, Merck and Co, Inc, 12040 115th Avenue N E, Kirkland, WA 98034, USA
    Science 302:2141-4. 2003
  6. ncbi request reprint Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes
    Pek Yee Lum
    Rosetta Inpharmatics LLC, a wholly owned subsidiary of Merck and Co, Inc, 12040 115th Avenue NE, Kirkland, WA 98034, USA
    Cell 116:121-37. 2004
  7. pmc A comprehensive transcript index of the human genome generated using microarrays and computational approaches
    Eric E Schadt
    Rosetta Inpharmatics LLC, 12040 115th Avenue NE, Kirkland, WA 98034, USA
    Genome Biol 5:R73. 2004
  8. ncbi request reprint Functional profiling of the Saccharomyces cerevisiae genome
    Guri Giaever
    Stanford Genome Technology Center, Stanford University, Palo Alto, California 94304, USA
    Nature 418:387-91. 2002
  9. ncbi request reprint Parallel analysis of tagged deletion mutants efficiently identifies genes involved in endoplasmic reticulum biogenesis
    Robin Wright
    University of Minnesota, Department of Genetics, Cell Biology and Development, 321 Church Street, 6 160 Jackson Hall, Minneapolis, MN 55455, USA
    Yeast 20:881-92. 2003

Detail Information

Publications9

  1. ncbi request reprint Recent developments in DNA microarrays
    Daniel D Shoemaker
    Rosetta Inpharmatics, 12040 115th Avenue North East, Kirkland, Washington 98034, USA
    Curr Opin Microbiol 5:334-7. 2002
    ..Supporting this view, the number of applications of DNA microarray technology has since expanded exponentially. Here, we review recent advances in microarray technology and selected new applications of the technology...
  2. ncbi request reprint DNA helicase gene interaction network defined using synthetic lethality analyzed by microarray
    Siew Loon Ooi
    Department of Molecular Biology and Genetics, The Johns Hopkins University School of Medicine, 617 Hunterian Building, 725 North Wolfe Street, Baltimore, Maryland 21205, USA
    Nat Genet 35:277-86. 2003
    ..SLAM detects synthetic lethality efficiently and ranks candidate genetic interactions, making it an especially useful method...
  3. ncbi request reprint Microarray standard data set and figures of merit for comparing data processing methods and experiment designs
    Yudong D He
    Rosetta Inpharmatics Inc, 12 040 115th Avenue Northeast, Kirkland, WA 98034, USA
    Bioinformatics 19:956-65. 2003
    ..There is a need for a standard framework for the microarray community to compare and improve analytical and statistical methods...
  4. pmc Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing
    John Castle
    Rosetta Inpharmatics, Merck and Co, Inc, 12040 115th Ave NE, Kirkland, Washington 98034, USA
    Genome Biol 4:R66. 2003
    ....
  5. ncbi request reprint Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
    Jason M Johnson
    Rosetta Inpharmatics LLC, Merck and Co, Inc, 12040 115th Avenue N E, Kirkland, WA 98034, USA
    Science 302:2141-4. 2003
    ..Adding to previous studies, the results indicate that at least 74% of human multi-exon genes are alternatively spliced...
  6. ncbi request reprint Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes
    Pek Yee Lum
    Rosetta Inpharmatics LLC, a wholly owned subsidiary of Merck and Co, Inc, 12040 115th Avenue NE, Kirkland, WA 98034, USA
    Cell 116:121-37. 2004
    ....
  7. pmc A comprehensive transcript index of the human genome generated using microarrays and computational approaches
    Eric E Schadt
    Rosetta Inpharmatics LLC, 12040 115th Avenue NE, Kirkland, WA 98034, USA
    Genome Biol 5:R73. 2004
    ..Further, expression activity over at least six conditions was more generally assessed using genomic tiling arrays consisting of probes tiled through a repeat-masked version of the genomic sequence making up chromosomes 20 and 22...
  8. ncbi request reprint Functional profiling of the Saccharomyces cerevisiae genome
    Guri Giaever
    Stanford Genome Technology Center, Stanford University, Palo Alto, California 94304, USA
    Nature 418:387-91. 2002
    ..Our results validate the yeast gene-deletion collection as a valuable resource for functional genomics...
  9. ncbi request reprint Parallel analysis of tagged deletion mutants efficiently identifies genes involved in endoplasmic reticulum biogenesis
    Robin Wright
    University of Minnesota, Department of Genetics, Cell Biology and Development, 321 Church Street, 6 160 Jackson Hall, Minneapolis, MN 55455, USA
    Yeast 20:881-92. 2003
    ....