Zhirong Bao

Summary

Affiliation: Memorial Sloan-Kettering Cancer Center
Country: USA

Publications

  1. pmc Control of cell cycle timing during C. elegans embryogenesis
    Zhirong Bao
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    Dev Biol 318:65-72. 2008
  2. pmc Actomyosin-based self-organization of cell internalization during C. elegans gastrulation
    Christian Pohl
    Developmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA
    BMC Biol 10:94. 2012
  3. pmc Multidimensional regulation of gene expression in the C. elegans embryo
    John Isaac Murray
    Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA
    Genome Res 22:1282-94. 2012
  4. doi request reprint Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development
    Max E Boeck
    Department of Genome Sciences, University of Washington School of Medicine, 1705 NE Pacific Street, Seattle, WA 98195, USA
    Dev Biol 358:345-55. 2011
  5. pmc Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans
    Zhongying Zhao
    Department of Genome Sciences, Box 355065, University of Washington, 1705 NE Pacific St, Seattle, WA 98195 5065, USA
    Dev Biol 314:93-9. 2008
  6. pmc Automated analysis of embryonic gene expression with cellular resolution in C. elegans
    John Isaac Murray
    Department of Genome Sciences, University of Washington School of Medicine, 1705 NE Pacific Street, Seattle, Washington 98195, USA
    Nat Methods 5:703-9. 2008
  7. ncbi request reprint The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
    John Isaac Murray
    Department of Genome Sciences, University of Washington Box 357730, Seattle, Washington 98195, USA
    Nat Protoc 1:1468-76. 2006
  8. pmc AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
    Thomas J Boyle
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    BMC Bioinformatics 7:275. 2006
  9. pmc Chiral forces organize left-right patterning in C. elegans by uncoupling midline and anteroposterior axis
    Christian Pohl
    Developmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA
    Dev Cell 19:402-12. 2010
  10. pmc Automated cell lineage tracing in Caenorhabditis elegans
    Zhirong Bao
    Department of Genome Sciences, University of Washington, WA 98195, USA
    Proc Natl Acad Sci U S A 103:2707-12. 2006

Collaborators

  • Zhongying Zhao
  • Thomas J Boyle
  • Max E Boeck
  • Anna Katerina Hadjantonakis
  • Sonja Nowotschin
  • Robert Waterston
  • Nansheng Chen
  • Patricia E Kuwabara
  • J Sulston
  • T Blumenthal
  • John Isaac Murray
  • Christian Pohl
  • Julia L Moore
  • Anthony Santella
  • Ladeana W Hillier
  • Zhuo Du
  • Alan Coulson
  • Lincoln D Stein
  • Dionne Vafeados
  • Michael Tiongson
  • Peter Weisdepp
  • Elicia Preston
  • Barbara Mericle
  • Matthew J Sandel
  • Thomas J Nicholas
  • Barbara L Mericle
  • John I Murray
  • James C Mullikin
  • David H A Fitch
  • Tracie L Miner
  • Richard K Wilson
  • Chris Clee
  • Laura Clarke
  • Ravi Kamath
  • Elaine R Mardis
  • Marc Sohrmann
  • Jacqueline E Schein
  • Robert E Fulton
  • Jane Rogers
  • Peter D'Eustachio
  • Sam Griffiths-Jones
  • Patrick Minx
  • Todd W Harris
  • Lucinda A Fulton
  • Michael R Brent
  • David Willey
  • C Wei
  • Marco A Marra
  • Robert W Plumb
  • Richard Durbin
  • Jason E Stajich
  • Asif Chinwalla
  • Avril Coghlan
  • John Spieth
  • Darin Blasiar

Detail Information

Publications14

  1. pmc Control of cell cycle timing during C. elegans embryogenesis
    Zhirong Bao
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    Dev Biol 318:65-72. 2008
    ..elegans embryogenesis as a model to dissect the interaction between differentiation and proliferation, and an effective approach combining genetic and statistical analysis at single-cell resolution...
  2. pmc Actomyosin-based self-organization of cell internalization during C. elegans gastrulation
    Christian Pohl
    Developmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA
    BMC Biol 10:94. 2012
    ..Despite the conservation of gastrulation as a key event in Metazoan embryogenesis, the morphogenetic mechanisms of self-organization (how global order or coordination can arise from local interactions) are poorly understood...
  3. pmc Multidimensional regulation of gene expression in the C. elegans embryo
    John Isaac Murray
    Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA
    Genome Res 22:1282-94. 2012
    ..The resulting data sets will be a useful resource for future research...
  4. doi request reprint Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development
    Max E Boeck
    Department of Genome Sciences, University of Washington School of Medicine, 1705 NE Pacific Street, Seattle, WA 98195, USA
    Dev Biol 358:345-55. 2011
    ....
  5. pmc Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans
    Zhongying Zhao
    Department of Genome Sciences, Box 355065, University of Washington, 1705 NE Pacific St, Seattle, WA 98195 5065, USA
    Dev Biol 314:93-9. 2008
    ....
  6. pmc Automated analysis of embryonic gene expression with cellular resolution in C. elegans
    John Isaac Murray
    Department of Genome Sciences, University of Washington School of Medicine, 1705 NE Pacific Street, Seattle, Washington 98195, USA
    Nat Methods 5:703-9. 2008
    ..Systematic application of this system could reveal the gene activity of each cell throughout development...
  7. ncbi request reprint The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
    John Isaac Murray
    Department of Genome Sciences, University of Washington Box 357730, Seattle, Washington 98195, USA
    Nat Protoc 1:1468-76. 2006
    ..The protocol requires about 1 h of user time spread over 2 days to generate the raw lineage, and an additional 2 or 4 h to edit the lineage to the 194- or 350-cell stage, respectively...
  8. pmc AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
    Thomas J Boyle
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    BMC Bioinformatics 7:275. 2006
    ....
  9. pmc Chiral forces organize left-right patterning in C. elegans by uncoupling midline and anteroposterior axis
    Christian Pohl
    Developmental Biology Program, Sloan Kettering Institute, 1275 York Avenue, New York, NY 10065, USA
    Dev Cell 19:402-12. 2010
    ..Chiral morphogenesis is timed by the cytokinetic furrow of a neighbor of the sister pair, providing a developmental clock and an unexpected signaling interaction between the contractile ring and the adjacent cells...
  10. pmc Automated cell lineage tracing in Caenorhabditis elegans
    Zhirong Bao
    Department of Genome Sciences, University of Washington, WA 98195, USA
    Proc Natl Acad Sci U S A 103:2707-12. 2006
    ..We envision that this automation will make it practical to systematically decipher the developmental genes and pathways encoded in the genome of C. elegans...
  11. doi request reprint Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis
    Julia L Moore
    Developmental Biology Program, Sloan Kettering Institute, New York, NY 10065, USA
    Development 140:3266-74. 2013
    ....
  12. pmc A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D
    Anthony Santella
    Developmental Biology, Sloan Kettering Institute, 1275 York Avenue, New York, New York 10065, USA
    BMC Bioinformatics 11:580. 2010
    ..Variability in nuclear appearance and undersampled volumetric data make this a challenge...
  13. pmc The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics
    Lincoln D Stein
    Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA
    PLoS Biol 1:E45. 2003
    ..elegans genome. Based on similarity to C. briggsae, we found strong evidence for 1,300 new C. elegans genes. In addition, comparisons of the two genomes will help to understand the evolutionary forces that mold nematode genomes...
  14. ncbi request reprint Genomics in C. elegans: so many genes, such a little worm
    Ladeana W Hillier
    Genome Sequencing Center, Washington University School of Medicine, St Louis, Missouri 63108, USA
    Genome Res 15:1651-60. 2005
    ..We now have a solid platform on which to build toward the lofty goal of a true molecular understanding of worm biology with all its implications including those for human health...