Tracy L Bergemann

Summary

Affiliation: Medtronic Inc
Country: USA

Publications

  1. pmc New methods for finding common insertion sites and co-occurring common insertion sites in transposon- and virus-based genetic screens
    Tracy L Bergemann
    Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN 55455, USA
    Nucleic Acids Res 40:3822-33. 2012
  2. pmc Malaria with neurological involvement in Ugandan children: effect on cognitive ability, academic achievement and behaviour
    Paul Bangirana
    Department of Psychiatry, Makerere University College of Health Sciences, Kampala, Uganda
    Malar J 10:334. 2011
  3. pmc Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics
    Tracy L Bergemann
    Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN 55455, USA
    BMC Bioinformatics 12:228. 2011
  4. pmc Clinical features and serum biomarkers in HIV immune reconstitution inflammatory syndrome after cryptococcal meningitis: a prospective cohort study
    David R Boulware
    Division of Infectious Diseases and International Medicine, Department of Medicine, University of Minnesota, Minneapolis, Minnesota, USA
    PLoS Med 7:e1000384. 2010
  5. pmc A transposon-based genetic screen in mice identifies genes altered in colorectal cancer
    Timothy K Starr
    Department of Genetics, Cell Biology and Development, Center for Genome Engineering, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA
    Science 323:1747-50. 2009
  6. doi request reprint Use of signal quality measurements to gain efficiency in the analysis of cDNA microarray data
    Tracy L Bergemann
    Division of Biostatistics, University of Minnesota, Minneapolis, MN 55455, USA
    J Genet Genomics 37:265-79. 2010
  7. pmc Structure-based prediction of insertion-site preferences of transposons into chromosomes
    Aron M Geurts
    Department of Genetics, Cell Biology and Development, The Arnold and Mabel Beckman Center for Transposon Research, University of Minnesota, Minneapolis, MN 55455, USA
    Nucleic Acids Res 34:2803-11. 2006
  8. doi request reprint Signal quality measurements for cDNA microarray data
    Tracy L Bergemann
    Division of Biostatistics, School of Public Health, University of Minnesota, A460 Mayo Building, MMC 303, 420 Delaware St SE, Minneapolis, MN 55455, USA
    IEEE/ACM Trans Comput Biol Bioinform 7:299-308. 2010
  9. doi request reprint Sarcomas in TP53 germline mutation carriers: a review of the IARC TP53 database
    Simona Ognjanovic
    Division of Pediatric Epidemiology and Clinical Research, University of Minnesota, Minneapolis, Minnesota, USA
    Cancer 118:1387-96. 2012
  10. pmc Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure
    David R Fermin
    Lillehei Heart Institute, Division of Cardiology, Developmental Biology Center, University of Minnesota, Minneapolis, USA
    Circ Cardiovasc Genet 1:117-25. 2008

Collaborators

Detail Information

Publications11

  1. pmc New methods for finding common insertion sites and co-occurring common insertion sites in transposon- and virus-based genetic screens
    Tracy L Bergemann
    Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN 55455, USA
    Nucleic Acids Res 40:3822-33. 2012
    ....
  2. pmc Malaria with neurological involvement in Ugandan children: effect on cognitive ability, academic achievement and behaviour
    Paul Bangirana
    Department of Psychiatry, Makerere University College of Health Sciences, Kampala, Uganda
    Malar J 10:334. 2011
    ..This study investigated the effect of malaria with neurological involvement on cognitive ability, behaviour and academic achievement...
  3. pmc Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics
    Tracy L Bergemann
    Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN 55455, USA
    BMC Bioinformatics 12:228. 2011
    ..This paper suggests an alternative estimate based on a proportion that is just as simple to calculate, just as intuitive, with the added benefit of greater numerical stability...
  4. pmc Clinical features and serum biomarkers in HIV immune reconstitution inflammatory syndrome after cryptococcal meningitis: a prospective cohort study
    David R Boulware
    Division of Infectious Diseases and International Medicine, Department of Medicine, University of Minnesota, Minneapolis, Minnesota, USA
    PLoS Med 7:e1000384. 2010
    ..The pathogenesis of IRIS is poorly understood and prediction of IRIS is not possible...
  5. pmc A transposon-based genetic screen in mice identifies genes altered in colorectal cancer
    Timothy K Starr
    Department of Genetics, Cell Biology and Development, Center for Genome Engineering, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA
    Science 323:1747-50. 2009
    ..These genes include APC, PTEN, and SMAD4. The screen also identified 17 candidate genes that had not previously been implicated in CRC, including POLI, PTPRK, and RSPO2...
  6. doi request reprint Use of signal quality measurements to gain efficiency in the analysis of cDNA microarray data
    Tracy L Bergemann
    Division of Biostatistics, University of Minnesota, Minneapolis, MN 55455, USA
    J Genet Genomics 37:265-79. 2010
    ..Using these spot quality estimates as weights can result in greater efficiency, in a statistical sense, when modeling microarray data...
  7. pmc Structure-based prediction of insertion-site preferences of transposons into chromosomes
    Aron M Geurts
    Department of Genetics, Cell Biology and Development, The Arnold and Mabel Beckman Center for Transposon Research, University of Minnesota, Minneapolis, MN 55455, USA
    Nucleic Acids Res 34:2803-11. 2006
    ..ProTIS analysis can be useful for functional genomic, gene transfer and human gene therapy applications using the SB system...
  8. doi request reprint Signal quality measurements for cDNA microarray data
    Tracy L Bergemann
    Division of Biostatistics, School of Public Health, University of Minnesota, A460 Mayo Building, MMC 303, 420 Delaware St SE, Minneapolis, MN 55455, USA
    IEEE/ACM Trans Comput Biol Bioinform 7:299-308. 2010
    ..We conclude that both approaches capture noise in the microarray platform and highlight situations where one method or the other is superior...
  9. doi request reprint Sarcomas in TP53 germline mutation carriers: a review of the IARC TP53 database
    Simona Ognjanovic
    Division of Pediatric Epidemiology and Clinical Research, University of Minnesota, Minneapolis, Minnesota, USA
    Cancer 118:1387-96. 2012
    ....
  10. pmc Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure
    David R Fermin
    Lillehei Heart Institute, Division of Cardiology, Developmental Biology Center, University of Minnesota, Minneapolis, USA
    Circ Cardiovasc Genet 1:117-25. 2008
    ..We report the first comprehensive analysis of gene expression differences by sex and age in left ventricular samples from 102 patients with dilated cardiomyopathy...
  11. pmc Antiretroviral therapy down-regulates innate antiviral response genes in patients with AIDS in sub-saharan Africa
    David R Boulware
    Division of Infectious Disease and International Medicine, Department of Medicine, University of Minnesota, Minneapolis, MN 55455, USA
    J Acquir Immune Defic Syndr 55:428-38. 2010
    ..We characterized the effects of successful antiretroviral therapy (ART) to identify the breadth and patterns of HIV-associated gene expression...