Research Topics
| J S HydeSummaryAffiliation: Medical College of Wisconsin Country: USA Publications
Research Grants
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Detail Information
Publications
Cross-correlation: an fMRI signal-processing strategyJames S Hyde
Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI 53226, USA
Neuroimage 62:848-51. 2012..1995. Magn. Reson. Med. 34:537-541). In this method, a whole volume time course of images is collected while the brain is nominally at rest and connectivity is studied by cross-correlation of pixel time courses...
W-band frequency-swept EPRJames S Hyde
National Biomedical EPR Center, Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI 53226, USA
J Magn Reson 205:93-101. 2010..The paper discusses technical advances required to reach this goal. The hypothesis that trapezoidal frequency sweep is an enabling technology for FT EPR is supported by this study...
High-resolution fMRI using multislice partial k-space GR-EPI with cubic voxelsJ S Hyde
Biophysics Research Institute, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA
Magn Reson Med 46:114-25. 2001..Robust fMRI data were obtained across all subjects using 1 x 1 x 1 mm(3) cubic voxels with 10 contiguous slices, although 1.5 x 1.5 x 1.5 mm(3) was found to be optimum. Magn Reson Med 46:114-125, 2001...
Microwave frequency modulation in CW EPR at W-band using a loop-gap resonatorJames S Hyde
Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI 53226 0509, USA
J Magn Reson 185:259-63. 2007..3 G at one W incident power, and the frequency deviation was 11.3 MHz p-p, which is equivalent to a field modulation amplitude of 4 G. W-band EPR using an LGR is a favorable configuration for microwave FM experiments...
Spin-label oximetry at Q- and W-bandW K Subczynski
Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI, USA
J Magn Reson 209:142-8. 2011..These benefits, together with other factors such as a higher resonator efficiency parameter and a new technique for canceling free induction decay signals, are discussed...
Molecular organization and dynamics of 1-palmitoyl-2-oleoylphosphatidylcholine bilayers containing a transmembrane alpha-helical peptideW K Subczynski
Biophysics Department, Institute of Molecular Biology, Jagiellonian University, Al Mickiewicza 3, 31 120 Krakow, Poland
Biochemistry 37:3156-64. 1998..It is concluded that L24 is highly miscible in POPC membranes even at high concentrations in the membrane...
Localization of the cortical response to smiling using new imaging paradigms with functional magnetic resonance imagingA K Gosain
Department of Plastic and Reconstructive Surgery, Medical College of Wisconsin, Milwaukee 53226, USA
Plast Reconstr Surg 108:1136-44. 2001..When combined with biofeedback therapy, this technique may help to improve the outcome of facial reanimation procedures in the future...
Simultaneous gradient-echo/spin-echo EPI of graded ischemia in human skeletal muscleK M Donahue
Biophysics Research Institute, and Department of Medicine, Medical College of Wisconsin, Milwaukee 53226, USA
J Magn Reson Imaging 8:1106-13. 1998....
Comparison of simultaneously measured perfusion and BOLD signal increases during brain activation with T(1)-based tissue identificationW M Luh
Biophysics Research Institute, Medical College of Wisconsin, Milwaukee, Wisconsin, USA
Magn Reson Med 44:137-43. 2000..Perfusion activation maps will likely represent the sites of neuronal activity better than do BOLD activation maps. Magn Reson Med 44:137-143, 2000...
Hyperbolic-cosine waveguide tapers and oversize rectangular waveguide for reduced broadband insertion loss in W-band electron paramagnetic resonance spectroscopyR R Mett
Department of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226 0509, USA
Rev Sci Instrum 82:074704. 2011..Minimum return loss was about 30 dB. This paper provides a foundation for further optimization, if needed. Methods are not specific to EPR or the microwave frequency band...
Concentration by centrifugation for gas exchange EPR oximetry measurements with loop-gap resonatorsWitold K Subczynski
Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI 53226, USA
J Magn Reson 176:244-8. 2005..Typically, the SNR was improved by a factor of five to eight. Oxygen accessibility applications in site-directed spin labeling studies are discussed...
Three-dimensional dynamic structure of the liquid-ordered domain in lipid membranes as examined by pulse-EPR oxygen probingWitold K Subczynski
Department of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA
Biophys J 92:1573-84. 2007..Third, the transmembrane OTP profile in the liquid-ordered domain that contained 50 mol % cholesterol dramatically differed from that which contained 27 mol % cholesterol...
Digit tapping model of functional activation in the rat somatosensory cortexMarie L Schulte
Department of Anesthesiology, Medical College of Wisconsin, Milwaukee, WI, USA
J Neurosci Methods 157:48-53. 2006....
Molecular dynamics of 1-palmitoyl-2-oleoylphosphatidylcholine membranes containing transmembrane alpha-helical peptides with alternating leucine and alanine residuesWitold K Subczynski
Biophysics Research Institute, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA
Biochemistry 42:3939-48. 2003..This explanation was confirmed by calculating the orientational order of leucine side chains in (LA)(12) and L(24) from molecular dynamics simulation studies...
Saturation recovery EPR and ELDOR at W-band for spin labelsWojciech Froncisz
Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plank Road, P O Box 26509, Milwaukee, WI 53226 0509, USA
J Magn Reson 193:297-304. 2008..K. Subczynski, T.G. Camenisch, J.J. Ratke, W. Froncisz, Spin label EPR T(1) values using saturation recovery from 2 to 35 GHz. J. Phys. Chem. B 108 (2004) 9524-9529]. The values of T(1e) decrease at 94 GHz relative to values at 35 GHz...
Multiquantum EPR spectroscopy of spin-labeled arrestin K267C at 35 GHzCandice S Klug
Department of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA
Biophys J 88:3641-7. 2005..Feasibility has been established for the use of this technique for site-directed spin-labeling studies of biologically relevant samples, particularly the study of protein structure and dynamics...
Aqueous flat-cells perpendicular to the electric field for use in electron paramagnetic resonance spectroscopy, II: designJason W Sidabras
Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226-0509, USA
J Magn Reson 172:333-41. 2005..These signal enhancements are predicted with sample holders fabricated from polytetrafluoroethylene. Additional improvement in EPR signal of up to 75% can be achieved by using sample holder materials with lower dielectric constants...
Multishot partial-k-space EPI for high-resolution fMRI demonstrated in a rat whisker barrel stimulation model at 3THanbing Lu
Department of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA
Magn Reson Med 50:1215-22. 2003..Most of the pixels that exhibited high BOLD responses had high blood volume weightings. The benefits of this technique are expected to increase for high-resolution fMRI at higher magnetic fields, where T(2) (*) is shorter...
Single-shot magnetic field mapping embedded in echo-planar time-course imagingVinai Roopchansingh
Department of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226 0509, USA
Magn Reson Med 50:839-43. 2003..Values ranged from 0.035 to 0.165 parts per million (ppm)...
Resting-state functional connectivity of the rat brainChristopher P Pawela
Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA
Magn Reson Med 59:1021-9. 2008..Consistent results in two different rat-brain systems, the sensorimotor and visual, strongly support the hypothesis that resting-state BOLD fluctuations are conserved across mammalian species and can be used to map brain systems...
Modeling of region-specific fMRI BOLD neurovascular response functions in rat brain reveals residual differences that correlate with the differences in regional evoked potentialsChristopher P Pawela
Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA
Neuroimage 41:525-34. 2008..This is the first report that regional differences in neuronal activation to the same stimulus lead to differential BOLD activation...
High spatial resolution increases the specificity of block-design BOLD fMRI studies of overt vowel productionDavid A Soltysik
Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI 53226, USA
Neuroimage 41:389-97. 2008....
Multipurpose EPR loop-gap resonator and cylindrical TE011 cavity for aqueous samples at 94 GHzJason W Sidabras
Biophysics Research Institute, Medical College of Wisconsin, Milwaukee, WI 53226 0509, USA
Rev Sci Instrum 78:034701. 2007....
Water diffusion heterogeneity index in the human brain is insensitive to the orientation of applied magnetic field gradientsKevin M Bennett
Department of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA
Magn Reson Med 56:235-9. 2006..It is proposed that in clinical use, maps of alpha can be created using diffusion-weighting gradients applied in a single direction that reflect the tissue heterogeneity...
Measurements of tissue T1 spin-lattice relaxation time and discrimination of large draining veins using transient EPI data sets in BOLD-weighted fMRI acquisitionsYousef Mazaheri
Department of Medical Physics and Radiology, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA
Neuroimage 32:603-15. 2006..9. The results indicate that transient data sets can provide additional information that is useful for both localization and characterization of the functionally relevant BOLD response...
Temporal evolution of the CBV-fMRI signal to rat whisker stimulation of variable duration and intensity: a linearity analysisHanbing Lu
Department of Biophysics, Medical College of Wisconsin, Milwaukee, 53226, USA
Neuroimage 26:432-40. 2005..However, significant deviations exist when the stimulus duration is manipulated, particularly in the trailing edge of the CBV-fMRI response curves...
Spatial correlations of laminar BOLD and CBV responses to rat whisker stimulation with neuronal activity localized by Fos expressionHanbing Lu
Department of Biophysics, Medical College of Wisconsin, Milwaukee 53226, USA
Magn Reson Med 52:1060-8. 2004..We conclude that neuronal activity can be inferred from CBV fMRI data with high spatial accuracy. The data indicate that both intracolumn functional connectivity and neurovascular coupling can be studied using CBV fMRI...
Momentum-weighted conjugate gradient descent algorithm for gradient coil optimizationHanbing Lu
Department of Biophysics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA
Magn Reson Med 51:158-64. 2004..The benefits of this design include improved gradient field uniformity and efficiency, with a shorter length than gradient coil designs using coaxial return paths...
Aqueous flat cells perpendicular to the electric field for use in electron paramagnetic resonance spectroscopyRichard R Mett
Department of Biophysics, Medical College of Wisconsin, Milwaukee, WI 53226-0509, USA
J Magn Reson 165:137-52. 2003..Rectangular UF modes have an RF magnetic field magnitude that is uniform in a plane. Based on this analysis, a practical multiple flat-cell design is proposed...
Cerebral cortical representation of external anal sphincter contraction: effect of effortMark K Kern
Medical College of Wisconsin Digestive DIsease Center, Division of Gastroenterology and Hepatology, Milwaukee, WI 53226, USA
Am J Physiol Gastrointest Liver Physiol 286:G304-11. 2004..Willful contraction of the EAS is associated with multifocal cerebral cortical activity. The volume and intensity of cerebral cortical activation is commensurate with the level of contractile effort...
Research Grants
- fMRI Technology and AnalysisJames S Hyde; Fiscal Year: 2010..In addition, the work proposed here is expected to contribute fundamentally to knowledge of brain plasticity following nerve injury. 2. ..
- Real-Time Motion Correction and Increased Scan-Session Sucess in Clinical MRIJames S Hyde; Fiscal Year: 2010..There are many more. ..
- BROADBAND EPR SPECTROMETER WITH DIGITAL SUBSAMPLINGJames Hyde; Fiscal Year: 2003..It is the only method that can detect the formation of free radicals in biology unambiguously. It contributes to health-related research at the basic fundamental level. ..
- DEVELOPMENT OF BIOMEDICAL ESR INSTRUMENTATIONJames Hyde; Fiscal Year: 2003..The investigator asserts that only on such a foundation can a rational approach to improved human health be based. ..
- CORE--SUBJECT INTERFACE SYSTEMSJames Hyde; Fiscal Year: 2002..abstract_text> ..
- 3T Whole-Body MRI Scanner for Functional ImagingJames Hyde; Fiscal Year: 2003..It will have no clinical fee-for-service usage. The fMRI group at MCW is superbly positioned to provide leadership at a national level in the use of fMRI in medicine. ..
- EPR Sample-cell-Resonator Design and ConstructionJames Hyde; Fiscal Year: 2007..Work proposed here will improve the quality of data obtained in these experiments. ..
- HFSS Modeling in Aqueous Biological Samples for EPRJames Hyde; Fiscal Year: 2007..An additional benefit is provided by Uniform Field resonators. Because the microwave field is uniform over the sample, all portions respond in the same way, which improves the data quality. ..
- Development of Biomedical EPR InstrumentationJames Hyde; Fiscal Year: 2007..Information on protein and membrane dynamics can be obtained on a time scale that is believed not only to be inaccessible using other modalities, but also to be of high biological relevance. ..
- fMRI Technology and AnalysisJames Hyde; Fiscal Year: 2007..Contributions to the underlying technological base of fMRI methodology will be of increasing significance for improved health care in future years as the methods enter clinical practice. ..
- Development of an fMRI Brain Plasticity Model in Rats Following Nerve TransferJames Hyde; Fiscal Year: 2006..The proposed research has significant opportunity to enhance knowledge and could well serve as the basis of a research career in medicine. ..
- LOOP-GAP RESONATOR COILS FOR MRI AND 31-P SPECTROSCOPYJames Hyde; Fiscal Year: 1993..Applications focus on tissue grafts and possible rejection including kidneys, heart and skin...
- DEVELOPMENT OF BIOMEDICAL ESR INSTRUMENTATIONJames Hyde; Fiscal Year: 1999..Instrumental development proposed here can contribute to instrumental design in other fields of spectroscopy including spin-echo EPR and high-resolution NMR. ..
- BIOMEDICAL ESR SPECTROSCOPY CENTERJames Hyde; Fiscal Year: 1980....
- DEVELOPMENT OF BIOMEDICAL ESR INSTRUMENTATIONJames Hyde; Fiscal Year: 1993..The costs of the units are relatively modest, and the designs will be readily transportable to other laboratories, which should increase the overall use of ESR saturation-recovery methodology...
- DEVELOPMENT OF BIOMEDICAL ESR INSTRUMENTATIONJames Hyde; Fiscal Year: 1991..ESR is a widely used basic spectroscopic technique that results in more than 2000 scientific papers per year, with about half in the life sciences over a wide variety of subjects...
- LOOP GAP RESONATOR COILS FOR MRI AND 31P SPECTROSCOPYJames Hyde; Fiscal Year: 2003..The research proposed here is in support of these four streams of fMRI research. ..
