Konstantinos T Konstantinidis

Summary

Affiliation: Massachusetts Institute of Technology
Country: USA

Publications

  1. pmc The bacterial species definition in the genomic era
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
    Philos Trans R Soc Lond B Biol Sci 361:1929-40. 2006
  2. pmc Toward a more robust assessment of intraspecies diversity, using fewer genetic markers
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA
    Appl Environ Microbiol 72:7286-93. 2006
  3. pmc Towards a genome-based taxonomy for prokaryotes
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, Michigan State University, East Lansing, Michigan 48824 1325, USA
    J Bacteriol 187:6258-64. 2005
  4. pmc Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics
    Deborah R Yoder-Himes
    Center for Microbial Ecology, Michigan State University, East Lansing, Michigan, United States of America
    PLoS ONE 5:e8724. 2010
  5. pmc Genomic insights that advance the species definition for prokaryotes
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, and Department of Crop and Soil Sciences, Michigan State University, East Lansing, MI 48824, USA
    Proc Natl Acad Sci U S A 102:2567-72. 2005
  6. ncbi request reprint DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
    Johan Goris
    Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
    Int J Syst Evol Microbiol 57:81-91. 2007
  7. pmc Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
    Patrick S G Chain
    Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
    Proc Natl Acad Sci U S A 103:15280-7. 2006
  8. ncbi request reprint Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea
    Jie Deng
    Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA
    Environ Microbiol 16:1854-66. 2014
  9. pmc Trends between gene content and genome size in prokaryotic species with larger genomes
    Konstantinos T Konstantinidis
    Center for Microbial Ecology and Departments of Crop and Soil Sciences, Michigan State University, East Lansing, MI 48824 1325, USA
    Proc Natl Acad Sci U S A 101:3160-5. 2004
  10. ncbi request reprint Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
    Konstantinos T Konstantinidis
    School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA
    Curr Opin Microbiol 10:504-9. 2007

Collaborators

Detail Information

Publications15

  1. pmc The bacterial species definition in the genomic era
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
    Philos Trans R Soc Lond B Biol Sci 361:1929-40. 2006
    ....
  2. pmc Toward a more robust assessment of intraspecies diversity, using fewer genetic markers
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA
    Appl Environ Microbiol 72:7286-93. 2006
    ..Our results are reproducible within the Salmonella, Burkholderia, and Shewanella groups and therefore are expected to have general applicability for microevolution studies, including metagenomic surveys...
  3. pmc Towards a genome-based taxonomy for prokaryotes
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, Michigan State University, East Lansing, Michigan 48824 1325, USA
    J Bacteriol 187:6258-64. 2005
    ..78 > R2 > 0.69 for the protein-coding genes versus R2 = 0.84 for the rRNA genes). The AAI approach outlined here could contribute significantly to a genome-based taxonomy for all microbial organisms...
  4. pmc Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics
    Deborah R Yoder-Himes
    Center for Microbial Ecology, Michigan State University, East Lansing, Michigan, United States of America
    PLoS ONE 5:e8724. 2010
    ..The identification of virulence factors and potential therapeutic targets has been hampered by the genomic diversity within the species as many factors are not shared among the pathogenic members of the species...
  5. pmc Genomic insights that advance the species definition for prokaryotes
    Konstantinos T Konstantinidis
    Center for Microbial Ecology, and Department of Crop and Soil Sciences, Michigan State University, East Lansing, MI 48824, USA
    Proc Natl Acad Sci U S A 102:2567-72. 2005
    ....
  6. ncbi request reprint DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
    Johan Goris
    Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
    Int J Syst Evol Microbiol 57:81-91. 2007
    ..It is concluded that ANI can accurately replace DDH values for strains for which genome sequences are available...
  7. pmc Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
    Patrick S G Chain
    Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
    Proc Natl Acad Sci U S A 103:15280-7. 2006
    ....
  8. ncbi request reprint Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea
    Jie Deng
    Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA
    Environ Microbiol 16:1854-66. 2014
    ..This study suggests that genetic analysis in conjunction with phenotypic evaluation can provide better understanding of the ecological framework and evolutionary trajectories of microbial species. ..
  9. pmc Trends between gene content and genome size in prokaryotic species with larger genomes
    Konstantinos T Konstantinidis
    Center for Microbial Ecology and Departments of Crop and Soil Sciences, Michigan State University, East Lansing, MI 48824 1325, USA
    Proc Natl Acad Sci U S A 101:3160-5. 2004
    ..These trends suggest that larger genome-sized species may dominate in environments where resources are scarce but diverse and where there is little penalty for slow growth, such as soil...
  10. ncbi request reprint Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
    Konstantinos T Konstantinidis
    School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA
    Curr Opin Microbiol 10:504-9. 2007
    ..Only then can the promise for a superior genome-based taxonomy materialize...
  11. doi request reprint Predicting sigma28 promoters in eleven Shewanella genomes
    Wenjie Song
    Department of Geography and Environmental Engineering, The Johns Hopkins University, 3400 N Charles Street, Baltimore, MD, USA
    FEMS Microbiol Lett 283:223-30. 2008
    ..This dual-pronged approach identified several genes that have sigma(28) promoters and that may be involved with motility or chemotaxis in Shewanella...
  12. doi request reprint Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre
    Vinh D Pham
    Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Environ Microbiol 10:2313-30. 2008
    ....
  13. doi request reprint Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
    Konstantinos T Konstantinidis
    Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
    ISME J 2:1052-65. 2008
    ....
  14. pmc Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations
    Eugene Kolker
    BIATECH, 19310 North Creek Parkway, Suite 115, Bothell, WA 98011, USA
    Proc Natl Acad Sci U S A 102:2099-104. 2005
    ..We propose that this integrative approach offers a valuable means to undertake the enormous challenge of characterizing the rapidly growing number of hypothetical proteins with each newly sequenced genome...
  15. pmc Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
    Steven J Hallam
    Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Proc Natl Acad Sci U S A 103:18296-301. 2006
    ..In total, the C. symbiosum genome was remarkably distinct from those of other known Archaea and shared many core metabolic features in common with its free-living planktonic relatives...