Research Topics
Species | Jinchuan XingSummaryAffiliation: Louisiana State University Country: USA Publications
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Detail Information
Publications
A mobile element-based evolutionary history of guenons (tribe Cercopithecini)Jinchuan Xing
Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
BMC Biol 5:5. 2007..SINEs are a class of non-autonomous mobile elements and are essentially homoplasy-free characters with known ancestral states, making them useful genetic markers for phylogenetic studies...- Under the genomic radar: the stealth model of Alu amplificationKyudong Han
Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
Genome Res 15:655-64. 2005.... 
A mobile element based phylogeny of Old World monkeysJinchuan Xing
Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
Mol Phylogenet Evol 37:872-80. 2005..Relationships among all major clades are in general agreement with other molecular and morphological data sets but have stronger statistical support...- Comprehensive analysis of Alu-associated diversity on the human sex chromosomesPauline A Callinan
Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
Gene 317:103-10. 2003..The Alu insertion polymorphisms identified in this study should prove useful for the study of human population genetics... - Comprehensive analysis of two Alu Yd subfamiliesJinchuan Xing
Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
J Mol Evol 57:S76-89. 2003..These Alu subfamilies are a source of genomic fossil relics for the study of primate phylogenetics and human population genetics... - SVA elements: a hominid-specific retroposon familyHui Wang
Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
J Mol Biol 354:994-1007. 2005..This makes SVA elements the youngest family of retroposons in the primate order... - Emergence of primate genes by retrotransposon-mediated sequence transductionJinchuan Xing
Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
Proc Natl Acad Sci U S A 103:17608-13. 2006..The duplication of entire genes and the creation of previously undescribed gene families through retrotransposon-mediated sequence transduction represent an important mechanism by which mobile elements impact their host genomes... - Modeling the amplification dynamics of human Alu retrotransposonsDale J Hedges
Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America
PLoS Comput Biol 1:e44. 2005.... - Resolution of mixed human DNA samples using mitochondrial DNA sequence variantsJerilyn A Walker
Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
Anal Biochem 325:171-3. 2004 - Differential alu mobilization and polymorphism among the human and chimpanzee lineagesDale J Hedges
Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, Louisiana 70803, USA
Genome Res 14:1068-75. 2004..We propose a population-based model to account for the observed fluctuation in Alu retroposition rates across primate taxa... - Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elementsJing Li
Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, Louisiana 70803, USA
Gene 448:242-9. 2009.... - Alu insertion loci and platyrrhine primate phylogenyDavid A Ray
Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-Scale Systems, Louisiana State University, 202 Life Sciences Bldg, Baton Rouge, LA 70803, USA
Mol Phylogenet Evol 35:117-26. 2005..00. In this study, we report one of the largest applications of SINE elements to phylogenetic analysis to date, and the results provide a robust molecular phylogeny for platyrrhine primates... - A SINE-based dichotomous key for primate identificationScott W Herke
Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Microsystems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, United States
Gene 390:39-51. 2007..With newly emerging genome databases, finding informative retrotransposon insertions is becoming much more rapid; thus, the general principle of using SINEs to identify organisms is broadly applicable... - Alu elements and hominid phylogeneticsAbdel-Halim Salem
Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
Proc Natl Acad Sci U S A 100:12787-91. 2003..Here we present the strongest evidence reported to date for a sister relationship between humans and chimpanzees while clearly distinguishing the chimpanzee and human lineages... - Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genomeKyudong Han
Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
Science 316:238-40. 2007..Mobile elements compose roughly 50% of primate genomes, and our findings illustrate their diversity and strong influence on genome evolution between closely related species... - Alu element mutation spectra: molecular clocks and the effect of DNA methylationJinchuan Xing
Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
J Mol Biol 344:675-82. 2004.... - Human DNA quantitation using Alu element-based polymerase chain reactionJerilyn A Walker
Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, LA 70803, USA
Anal Biochem 315:122-8. 2003..The introduction of these assays to forensic laboratories will undoubtedly increase the sensitivity and specificity of human DNA detection and quantitation from complex sources... - SINEs of a nearly perfect characterDavid A Ray
Department of Biology, West Virginia University, PO Box 6057, Morgantown, West Virginia 26506, USA
Syst Biol 55:928-35. 2006.... - Evolutionary and biomedical insights from the rhesus macaque genomeRichard A Gibbs
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA
Science 316:222-34. 2007..The complete description of the macaque genome blueprint enhances the utility of this animal model for biomedical research and improves our understanding of the basic biology of the species... - Mobile DNA elements in primate and human evolutionJinchuan Xing
Department of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, UT 84112, USA
Am J Phys Anthropol . 2007..Finally, these elements have had impacts on the genome itself. We review how they have influenced fundamental ongoing processes like nonhomologous recombination, genomic deletion, and X chromosome inactivation...