Jinchuan Xing

Summary

Affiliation: Louisiana State University
Country: USA

Publications

  1. pmc A mobile element-based evolutionary history of guenons (tribe Cercopithecini)
    Jinchuan Xing
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
    BMC Biol 5:5. 2007
  2. pmc Under the genomic radar: the stealth model of Alu amplification
    Kyudong Han
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
    Genome Res 15:655-64. 2005
  3. ncbi request reprint A mobile element based phylogeny of Old World monkeys
    Jinchuan Xing
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
    Mol Phylogenet Evol 37:872-80. 2005
  4. ncbi request reprint Comprehensive analysis of Alu-associated diversity on the human sex chromosomes
    Pauline A Callinan
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    Gene 317:103-10. 2003
  5. ncbi request reprint Comprehensive analysis of two Alu Yd subfamilies
    Jinchuan Xing
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    J Mol Evol 57:S76-89. 2003
  6. ncbi request reprint SVA elements: a hominid-specific retroposon family
    Hui Wang
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi Scale Systems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    J Mol Biol 354:994-1007. 2005
  7. pmc Emergence of primate genes by retrotransposon-mediated sequence transduction
    Jinchuan Xing
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
    Proc Natl Acad Sci U S A 103:17608-13. 2006
  8. pmc Modeling the amplification dynamics of human Alu retrotransposons
    Dale J Hedges
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America
    PLoS Comput Biol 1:e44. 2005
  9. ncbi request reprint Resolution of mixed human DNA samples using mitochondrial DNA sequence variants
    Jerilyn A Walker
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    Anal Biochem 325:171-3. 2004
  10. pmc Differential alu mobilization and polymorphism among the human and chimpanzee lineages
    Dale J Hedges
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, Louisiana 70803, USA
    Genome Res 14:1068-75. 2004

Collaborators

Detail Information

Publications20

  1. pmc A mobile element-based evolutionary history of guenons (tribe Cercopithecini)
    Jinchuan Xing
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
    BMC Biol 5:5. 2007
    ..SINEs are a class of non-autonomous mobile elements and are essentially homoplasy-free characters with known ancestral states, making them useful genetic markers for phylogenetic studies...
  2. pmc Under the genomic radar: the stealth model of Alu amplification
    Kyudong Han
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
    Genome Res 15:655-64. 2005
    ....
  3. ncbi request reprint A mobile element based phylogeny of Old World monkeys
    Jinchuan Xing
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
    Mol Phylogenet Evol 37:872-80. 2005
    ..Relationships among all major clades are in general agreement with other molecular and morphological data sets but have stronger statistical support...
  4. ncbi request reprint Comprehensive analysis of Alu-associated diversity on the human sex chromosomes
    Pauline A Callinan
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    Gene 317:103-10. 2003
    ..The Alu insertion polymorphisms identified in this study should prove useful for the study of human population genetics...
  5. ncbi request reprint Comprehensive analysis of two Alu Yd subfamilies
    Jinchuan Xing
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    J Mol Evol 57:S76-89. 2003
    ..These Alu subfamilies are a source of genomic fossil relics for the study of primate phylogenetics and human population genetics...
  6. ncbi request reprint SVA elements: a hominid-specific retroposon family
    Hui Wang
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi Scale Systems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    J Mol Biol 354:994-1007. 2005
    ..This makes SVA elements the youngest family of retroposons in the primate order...
  7. pmc Emergence of primate genes by retrotransposon-mediated sequence transduction
    Jinchuan Xing
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
    Proc Natl Acad Sci U S A 103:17608-13. 2006
    ..The duplication of entire genes and the creation of previously undescribed gene families through retrotransposon-mediated sequence transduction represent an important mechanism by which mobile elements impact their host genomes...
  8. pmc Modeling the amplification dynamics of human Alu retrotransposons
    Dale J Hedges
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America
    PLoS Comput Biol 1:e44. 2005
    ....
  9. ncbi request reprint Resolution of mixed human DNA samples using mitochondrial DNA sequence variants
    Jerilyn A Walker
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    Anal Biochem 325:171-3. 2004
  10. pmc Differential alu mobilization and polymorphism among the human and chimpanzee lineages
    Dale J Hedges
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, Louisiana 70803, USA
    Genome Res 14:1068-75. 2004
    ..We propose a population-based model to account for the observed fluctuation in Alu retroposition rates across primate taxa...
  11. pmc Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements
    Jing Li
    Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, Louisiana 70803, USA
    Gene 448:242-9. 2009
    ....
  12. ncbi request reprint Alu insertion loci and platyrrhine primate phylogeny
    David A Ray
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Multi Scale Systems, Louisiana State University, 202 Life Sciences Bldg, Baton Rouge, LA 70803, USA
    Mol Phylogenet Evol 35:117-26. 2005
    ..00. In this study, we report one of the largest applications of SINE elements to phylogenetic analysis to date, and the results provide a robust molecular phylogeny for platyrrhine primates...
  13. ncbi request reprint A SINE-based dichotomous key for primate identification
    Scott W Herke
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Microsystems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, United States
    Gene 390:39-51. 2007
    ..With newly emerging genome databases, finding informative retrotransposon insertions is becoming much more rapid; thus, the general principle of using SINEs to identify organisms is broadly applicable...
  14. pmc Alu elements and hominid phylogenetics
    Abdel Halim Salem
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    Proc Natl Acad Sci U S A 100:12787-91. 2003
    ..Here we present the strongest evidence reported to date for a sister relationship between humans and chimpanzees while clearly distinguishing the chimpanzee and human lineages...
  15. ncbi request reprint Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome
    Kyudong Han
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Multi Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA
    Science 316:238-40. 2007
    ..Mobile elements compose roughly 50% of primate genomes, and our findings illustrate their diversity and strong influence on genome evolution between closely related species...
  16. ncbi request reprint Alu element mutation spectra: molecular clocks and the effect of DNA methylation
    Jinchuan Xing
    Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio Modular Microsystems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
    J Mol Biol 344:675-82. 2004
    ....
  17. ncbi request reprint Human DNA quantitation using Alu element-based polymerase chain reaction
    Jerilyn A Walker
    Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, LA 70803, USA
    Anal Biochem 315:122-8. 2003
    ..The introduction of these assays to forensic laboratories will undoubtedly increase the sensitivity and specificity of human DNA detection and quantitation from complex sources...
  18. ncbi request reprint SINEs of a nearly perfect character
    David A Ray
    Department of Biology, West Virginia University, PO Box 6057, Morgantown, West Virginia 26506, USA
    Syst Biol 55:928-35. 2006
    ....
  19. ncbi request reprint Evolutionary and biomedical insights from the rhesus macaque genome
    Richard A Gibbs
    Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA
    Science 316:222-34. 2007
    ..The complete description of the macaque genome blueprint enhances the utility of this animal model for biomedical research and improves our understanding of the basic biology of the species...
  20. ncbi request reprint Mobile DNA elements in primate and human evolution
    Jinchuan Xing
    Department of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, UT 84112, USA
    Am J Phys Anthropol . 2007
    ..Finally, these elements have had impacts on the genome itself. We review how they have influenced fundamental ongoing processes like nonhomologous recombination, genomic deletion, and X chromosome inactivation...