Susannah G Tringe

Summary

Affiliation: Lawrence Berkeley National Laboratory
Country: USA

Publications

  1. pmc Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
    Fabio Gori
    Radboud University Nijmegen, Institute for Computing and Information Science, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
    BMC Genomics 14:7. 2013
  2. pmc Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases
    Luen Luen Li
    Brookhaven National Laboratory, Upton, NY, USA
    Biotechnol Biofuels 4:23. 2011
  3. doi request reprint A renaissance for the pioneering 16S rRNA gene
    Susannah G Tringe
    DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
    Curr Opin Microbiol 11:442-6. 2008
  4. pmc Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
    Filipa Godoy-Vitorino
    Department of Biology, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico
    ISME J 6:531-41. 2012
  5. doi request reprint Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
    Shaomei He
    Department of Energy Joint Genome Institute, Walnut Creek, California, USA
    Nat Methods 7:807-12. 2010
  6. doi request reprint Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
    Matthias Hess
    Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598, USA
    Science 331:463-7. 2011

Collaborators

  • Feng Chen
  • Philip Hugenholtz
  • Roderick I Mackie
  • Axel Visel
  • Eoin L Brodie
  • Tao Zhang
  • Matthias Hess
  • Rotem Sorek
  • Zhong Wang
  • Fabio Gori
  • Filipa Godoy-Vitorino
  • Luen Luen Li
  • Shaomei He
  • Huub J M Op den Camp
  • Gianluigi Folino
  • Mike S M Jetten
  • Elena Marchiori
  • Sacha A F T van Hijum
  • Ulas Karaoz
  • Sara Leal
  • Maria Gloria Dominguez-Bello
  • Katherine C Goldfarb
  • Maria A Garcia-Amado
  • PHILLIP BRUMM
  • Yian Biao Zhang
  • Sean M McCorkle
  • Daniel Van Der Lelie
  • DAVID A MEAD
  • Michael E Himmel
  • Michael G Blewitt
  • Safiyh Taghavi
  • Colleen Drinkwater
  • Roman Brunecky
  • William S Adney
  • Omri Wurtzel
  • Jeff L Froula
  • Erika A Lindquist
  • Kanwar Singh
  • Suzan Yilmaz

Detail Information

Publications6

  1. pmc Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
    Fabio Gori
    Radboud University Nijmegen, Institute for Computing and Information Science, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
    BMC Genomics 14:7. 2013
    ..fulgida). These datasets were obtained using Roche 454 FLX and Sanger sequencing with two different libraries (shotgun and fosmid)...
  2. pmc Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases
    Luen Luen Li
    Brookhaven National Laboratory, Upton, NY, USA
    Biotechnol Biofuels 4:23. 2011
    ..abstract:..
  3. doi request reprint A renaissance for the pioneering 16S rRNA gene
    Susannah G Tringe
    DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
    Curr Opin Microbiol 11:442-6. 2008
    ..The standard conclusion that microbial ecosystems are remarkably complex and diverse is now being replaced by detailed insights into microbial ecology and evolution based only on this one historically important marker gene...
  4. pmc Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
    Filipa Godoy-Vitorino
    Department of Biology, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico
    ISME J 6:531-41. 2012
    ..Regardless of the independent origin of foregut fermentation in birds and mammals, organ function has led to convergence of the microbial community structure in phylogenetically distant hosts...
  5. doi request reprint Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
    Shaomei He
    Department of Energy Joint Genome Institute, Walnut Creek, California, USA
    Nat Methods 7:807-12. 2010
    ..Illumina sequencing itself also can compromise quantitative data analysis by introducing a G+C bias between runs...
  6. doi request reprint Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
    Matthias Hess
    Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598, USA
    Science 331:463-7. 2011
    ..These data sets provide a substantially expanded catalog of genes and genomes participating in the deconstruction of cellulosic biomass...