Hanchuan Peng

Summary

Affiliation: Lawrence Berkeley National Laboratory
Country: USA

Publications

  1. ncbi request reprint Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy
    Hanchuan Peng
    Lawrence Berkeley National Laboratory, University of California at Berkeley, 1 Cyclotron Road, MS 84 171, Berkeley, CA 94720, USA
    IEEE Trans Pattern Anal Mach Intell 27:1226-38. 2005
  2. pmc Phenotype clustering of breast epithelial cells in confocal images based on nuclear protein distribution analysis
    Fuhui Long
    Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    BMC Cell Biol 8:S3. 2007
  3. ncbi request reprint Minimum redundancy feature selection from microarray gene expression data
    Chris Ding
    Computational Research Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
    J Bioinform Comput Biol 3:185-205. 2005
  4. ncbi request reprint Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques
    Chris Ding
    Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
    Int J Data Min Bioinform 1:162-77. 2006
  5. ncbi request reprint A Bayesian morphometry algorithm
    Edward H Herskovits
    Department of Radiology, University of Pennsylvania, 3600 Market Street, Suite 370, Room 117, Philadelphia, PA 19104, USA
    IEEE Trans Med Imaging 23:723-37. 2004
  6. pmc Automatic image analysis for gene expression patterns of fly embryos
    Hanchuan Peng
    Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
    BMC Cell Biol 8:S7. 2007
  7. ncbi request reprint Automatic recognition and annotation of gene expression patterns of fly embryos
    Jie Zhou
    Department of Computer Science, Northern Illinois University, DeKalb, IL 60115, USA
    Bioinformatics 23:589-96. 2007
  8. pmc Straightening Caenorhabditis elegans images
    Hanchuan Peng
    Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
    Bioinformatics 24:234-42. 2008
  9. pmc Bioimage informatics: a new area of engineering biology
    Hanchuan Peng
    Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
    Bioinformatics 24:1827-36. 2008

Detail Information

Publications9

  1. ncbi request reprint Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy
    Hanchuan Peng
    Lawrence Berkeley National Laboratory, University of California at Berkeley, 1 Cyclotron Road, MS 84 171, Berkeley, CA 94720, USA
    IEEE Trans Pattern Anal Mach Intell 27:1226-38. 2005
    ..The results confirm that mRMR leads to promising improvement on feature selection and classification accuracy...
  2. pmc Phenotype clustering of breast epithelial cells in confocal images based on nuclear protein distribution analysis
    Fuhui Long
    Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    BMC Cell Biol 8:S3. 2007
    ..Here we describe a method that creates a hierarchical tree of the given cell phenotypes and calculates the statistical significance between them, based on the clustering analysis of nuclear protein distributions...
  3. ncbi request reprint Minimum redundancy feature selection from microarray gene expression data
    Chris Ding
    Computational Research Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
    J Bioinform Comput Biol 3:185-205. 2005
    ..SUPPLIMENTARY: The top 60 MRMR genes for each of the datasets are listed in http://crd.lbl.gov/~cding/MRMR/. More information related to MRMR methods can be found at http://www.hpeng.net/...
  4. ncbi request reprint Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques
    Chris Ding
    Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
    Int J Data Min Bioinform 1:162-77. 2006
    ..From this, we extend the clique concept from unweighted graph to weighted graph. We outline several applications and present results of detecting protein functional modules in a protein interaction network...
  5. ncbi request reprint A Bayesian morphometry algorithm
    Edward H Herskovits
    Department of Radiology, University of Pennsylvania, 3600 Market Street, Suite 370, Room 117, Philadelphia, PA 19104, USA
    IEEE Trans Med Imaging 23:723-37. 2004
    ..e., t-test and paired t-test) fails in the nonlinear-association case...
  6. pmc Automatic image analysis for gene expression patterns of fly embryos
    Hanchuan Peng
    Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
    BMC Cell Biol 8:S7. 2007
    ..The increasing availability of ISH image data motivates the development of automated computational approaches to the analysis of gene expression patterns...
  7. ncbi request reprint Automatic recognition and annotation of gene expression patterns of fly embryos
    Jie Zhou
    Department of Computer Science, Northern Illinois University, DeKalb, IL 60115, USA
    Bioinformatics 23:589-96. 2007
    ..So far, annotations of these images are done by manually assigning a subset of anatomy ontology terms to an image. This time-consuming process depends heavily on the consistency of experts...
  8. pmc Straightening Caenorhabditis elegans images
    Hanchuan Peng
    Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
    Bioinformatics 24:234-42. 2008
    ..For example, worm bodies usually curve significantly in images. Thus one must 'straighten' the worms if they are to be compared under a canonical coordinate system...
  9. pmc Bioimage informatics: a new area of engineering biology
    Hanchuan Peng
    Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
    Bioinformatics 24:1827-36. 2008
    ....