Jeffrey A Martin

Summary

Affiliation: Lawrence Berkeley National Laboratory
Country: USA

Publications

  1. pmc Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
    Zhide Fang
    Biostatistics Program, School of Public Health, LSU Health Sciences Center, 2020 Gravier Street, 3rd Floor, New Orleans, LA, 70112, USA
    Cell Biosci 2:26. 2012
  2. pmc Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads
    Jeffrey Martin
    Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
    BMC Genomics 11:663. 2010
  3. pmc Bacillus anthracis genome organization in light of whole transcriptome sequencing
    Jeffrey Martin
    DOE Joint Genome Institute, Walnut Creek, CA 94598, USA
    BMC Bioinformatics 11:S10. 2010
  4. doi request reprint Next-generation transcriptome assembly
    Jeffrey A Martin
    Lawrence Berkeley National Laboratory, DOE Joint Genome Institute, 2800 Mitchell Drive, MS100 Walnut Creek, California 94598, USA
    Nat Rev Genet 12:671-82. 2011

Detail Information

Publications4

  1. pmc Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
    Zhide Fang
    Biostatistics Program, School of Public Health, LSU Health Sciences Center, 2020 Gravier Street, 3rd Floor, New Orleans, LA, 70112, USA
    Cell Biosci 2:26. 2012
    ..This review attempts to give an in-depth review of these statistical methods, with the goal of providing a comprehensive guide when choosing appropriate metrics for RNA-Seq statistical analyses...
  2. pmc Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads
    Jeffrey Martin
    Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
    BMC Genomics 11:663. 2010
    ....
  3. pmc Bacillus anthracis genome organization in light of whole transcriptome sequencing
    Jeffrey Martin
    DOE Joint Genome Institute, Walnut Creek, CA 94598, USA
    BMC Bioinformatics 11:S10. 2010
    ..Interestingly, we observed that many pseudogenes possess not only a sequence with detectable coding potential but also promoters that maintain transcriptional activity...
  4. doi request reprint Next-generation transcriptome assembly
    Jeffrey A Martin
    Lawrence Berkeley National Laboratory, DOE Joint Genome Institute, 2800 Mitchell Drive, MS100 Walnut Creek, California 94598, USA
    Nat Rev Genet 12:671-82. 2011
    ..This Review summarizes the recent developments in transcriptome assembly approaches - reference-based, de novo and combined strategies - along with some perspectives on transcriptome assembly in the near future...