Research Topics
| Terry C HazenSummaryAffiliation: Lawrence Berkeley National Laboratory Country: USA Publications
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Detail Information
Publications
Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCETerry C Hazen
Lawrence Berkeley National Laboratory, Center for Environmental Biotechnology, MS 70A 3317, One Cyclotron Rd, Berkeley, CA 94720, USA
Arch Microbiol 191:221-32. 2009..This study demonstrates that the use of nucleic acid analytical methods provided a gene specific assessment of the effects of in situ treatment technologies...- Deep-sea oil plume enriches indigenous oil-degrading bacteriaTerry C Hazen
MS 70A 3317, One Cyclotron Road, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
Science 330:204-8. 2010..Based on these results, the potential exists for intrinsic bioremediation of the oil plume in the deep-water column without substantial oxygen drawdown... 
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidationEoin L Brodie
Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA 94720, USA
Appl Environ Microbiol 72:6288-98. 2006..High-density phylogenetic microarrays constitute a powerful tool, enabling the detection and monitoring of a substantial portion of the microbial population in a routine, accurate, and reproducible manner...
Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sedimentTetsu K Tokunaga
Lawrence Berkeley National Laboratory, Berkeley, California 94720, and University of California, Berkeley, California 94720, USA
Environ Sci Technol 42:8901-7. 2008..These offsetting influences will require careful control of OC supply rates in order to optimize bioreduction-based U stabilization...- Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris HildenboroughAindrila Mukhopadhyay
Berkeley Center for Synthetic Biology, 717 Potter Street, Berkeley, CA 94720, USA
J Bacteriol 189:5996-6010. 2007..vulgaris and suggest that while exposure to air is highly detrimental to D. vulgaris, this bacterium can successfully cope with periodic exposure to low O(2) levels in its environment... - Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sedimentJiamin Wan
Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
Environ Sci Technol 42:7573-9. 2008..The data also suggested that low OC concentrations could not sustain the reducing condition of the sediment for much longer time. Bioreduced U(IV) is not sustainable in an oxidizing environment for a very long time... - PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChipKristen M DeAngelis
Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
Appl Environ Microbiol 77:6313-22. 2011.... - Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwaterEoin L Brodie
Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, United States
Chemosphere 85:660-5. 2011..The results of these experiments demonstrate that amendment with the pHRC and MRC forms result in effective removal of Cr(VI) from solution most likely by both direct (enzymatic) and indirect (microbially generated reductant) mechanisms... - Environmental genomics reveals a single-species ecosystem deep within EarthDylan Chivian
Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
Science 322:275-8. 2008.... - Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicatorsCindy H Wu
Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
PLoS ONE 5:e11285. 2010..A large percentage of the urban watersheds in the United States are affected by fecal pollution, including human pathogens, thus warranting comprehensive monitoring... - Survey of large protein complexes in D. vulgaris reveals great structural diversityBong Gyoon Han
Life Sciences, Genomics, Earth Sciences, and Physical Biosciences Divisions, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
Proc Natl Acad Sci U S A 106:16580-5. 2009..As a consequence, we suggest that relying solely on previously determined quaternary structures for homologous proteins may not be sufficient to properly understand their role in another cell of interest... - In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compoundBoris Faybishenko
Lawrence Berkeley National Laboratory, Berkeley, California, USA
Environ Sci Technol 42:8478-85. 2008..The degree of sustainability of Cr(VI) reductive bioimmobilization under different redox conditions at this and other contaminated sites is currently under study... - Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spillJacob Baelum
MS 70A 3317, 1 Cyclotron Rd, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
Environ Microbiol 14:2405-16. 2012..Together these data highlight several features that provide Colwellia with the capacity to degrade oil in cold, deep marine habitats, including aggregation together with oil droplets into flocs and hydrocarbon degradation ability... - Overcoming the anaerobic hurdle in phenotypic microarrays: generation and visualization of growth curve data for Desulfovibrio vulgaris HildenboroughSharon Borglin
Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
J Microbiol Methods 76:159-68. 2009..The PM method promises to be a valuable strategy in our systems biology approach to D. vulgaris studies and is readily applicable to other anaerobic and aerobic bacteria... - Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approachAindrila Mukhopadhyay
Virtual Institute of Microbial Stress and Survival, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
J Bacteriol 188:4068-78. 2006..vulgaris responded similarly to the two stresses. Integration of data from multiple methods allowed us to develop a conceptual model for the salt stress response in D. vulgaris that can be compared to those in other microorganisms... - Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spillOlivia U Mason
Ecology Department, Lawrence Berkeley National Laboratory, One Cyclotron Rd, Berkeley, CA 94720, USA
ISME J 6:1715-27. 2012..These data point towards a rapid response of members of the Oceanospirillales to aliphatic hydrocarbons in the deep sea... - Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acidYinjie J Tang
Synthetic Biology Department, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 3224, USA
Appl Environ Microbiol 73:3859-64. 2007..These findings enable a better understanding of the relationship between genome annotation and extant metabolic pathways in G. metallireducens... - Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometryYinjie Tang
Virtual Institute of Microbial Stress and Survival, Department of Chemical Engineering and Bioengineering, University of California, Berkeley, California, USA
J Bacteriol 189:940-9. 2007..vulgaris and also demonstrate that FT-ICR MS is a powerful tool for isotopomer analysis, overcoming the problems with both GC-MS and nuclear magnetic resonance spectroscopy... - Analysis of metabolic pathways and fluxes in a newly discovered thermophilic and ethanol-tolerant Geobacillus strainYinjie J Tang
Virtual Institute for Microbial Stress and Survival, Berkeley, California, USA
Biotechnol Bioeng 102:1377-86. 2009..thermoglucosidasius M10EXG reduces the maximum ethanol yield by approximately threefold, thus indicating that both pathways should be modified to maximize ethanol production... - Distribution of chromium contamination and microbial activity in soil aggregatesTetsu K Tokunaga
Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
J Environ Qual 32:541-9. 2003..Typical methods of soil sampling and analyses that average over redox gradients within aggregates can erase important biogeochemical spatial relations necessary for understanding these environments... - In situ reduction of chromium(VI) in heavily contaminated soils through organic carbon amendmentTetsu K Tokunaga
Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
J Environ Qual 32:1641-9. 2003..These results show that acceleration of in situ Cr(VI) reduction with addition of organic carbon is possible in even heavily contaminated soils and suggest that microbially dependent reduction pathways can be dominant... - Comparison of aerobic and anaerobic biotreatment of municipal solid wasteSharon E Borglin
Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
J Air Waste Manag Assoc 54:815-22. 2004..Both treatment regimes provide the opportunity for disposal and remediation of liquid waste... - Reoxidation of bioreduced uranium under reducing conditionsJiamin Wan
Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
Environ Sci Technol 39:6162-9. 2005..These results show that in-situ U remediation by organic carbon-based reductive precipitation can be problematic in sediments and groundwaters with neutral to alkaline pH, where uranyl carbonates are most stable... - Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris HildenboroughSwapnil R Chhabra
Virtual Institute of Microbial Stress and Survival, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
PLoS ONE 6:e21470. 2011..These include the distinct role of the putative carbon monoxide-induced hydrogenase, unique electron transfer routes associated with different oxidoreductases, and the possible role of methylation in regulating sulfate reduction... - Use of immunomagnetic separation for the detection of Desulfovibrio vulgaris from environmental samplesRomy Chakraborty
Lawrence Berkeley National Laboratory, Berkeley, CA, USA
J Microbiol Methods 86:204-9. 2011..Field deployable IMS technology may greatly facilitate environmental sampling and bioremediation process monitoring and enable transcriptomics and proteomics/metabolomics-based studies directly on cells collected from the field... - Real-time molecular monitoring of chemical environment in obligate anaerobes during oxygen adaptive responseHoi Ying N Holman
Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA 94720, USA
Proc Natl Acad Sci U S A 106:12599-604. 2009..This ability to monitor chemical changes at the molecular level can yield important insights into a wide range of adaptive responses... - Systems biology approach to bioremediationRomy Chakraborty
Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
Curr Opin Biotechnol 23:483-90. 2012.... - High-throughput isolation and characterization of untagged membrane protein complexes: outer membrane complexes of Desulfovibrio vulgarisPeter J Walian
Lawrence Berkeley National Laboratory, Berkeley, California, United States
J Proteome Res 11:5720-35. 2012..The workflow utilized here should be effective for the global characterization of membrane protein complexes in a wide range of organisms... - Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysisQiang He
Virtual Institute for Microbial Stress and Survival, Berkeley, California 94720, USA
Appl Environ Microbiol 72:4370-81. 2006.... - Complete genome sequence of the electricity-producing "Thermincola potens" strain JRKathryne G Byrne-Bailey
Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA
J Bacteriol 192:4078-9. 2010..Here we report the complete genome sequence of strain JR... - Uranium reduction in sediments under diffusion-limited transport of organic carbonTetsu K Tokunaga
Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
Environ Sci Technol 39:7077-83. 2005.... - Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomicsAlyssa M Redding
Department of Chemical Engineering, University of California, Berkeley, CA 94720-3224, USA
Brief Funct Genomic Proteomic 5:133-43. 2006..Finally, a number of hypothetical proteins were among the most significant changers, indicating that there may be unknown mechanisms initiated upon nitrate stress in DvH... - Octomeric pyruvate-ferredoxin oxidoreductase from Desulfovibrio vulgarisFlorian Garczarek
Life Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
J Struct Biol 159:9-18. 2007..This study demonstrates that the strategy of intermediate resolution EM reconstruction coupled to homology modeling and docking can be powerful enough to infer the functionality of single amino acid residues... - Using the stress response to monitor process control: pathways to more effective bioremediationTerry C Hazen
Virtual Institute of Microbial Stress and Survival, Earth Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, USA
Curr Opin Biotechnol 17:285-90. 2006..Knowledge of the stress response in the environment will facilitate the control of bioremediation and other processes mediated by complex microbial communities...