Terry C Hazen

Summary

Affiliation: Lawrence Berkeley National Laboratory
Country: USA

Publications

  1. pmc Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization
    Michael J Dougherty
    The Joint Bioenergy Institute, Emeryville, USA
    BMC Biotechnol 12:38. 2012
  2. doi request reprint Deep-sea oil plume enriches indigenous oil-degrading bacteria
    Terry C Hazen
    MS 70A 3317, One Cyclotron Road, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Science 330:204-8. 2010
  3. doi request reprint Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCE
    Terry C Hazen
    Lawrence Berkeley National Laboratory, Center for Environmental Biotechnology, MS 70A 3317, One Cyclotron Rd, Berkeley, CA 94720, USA
    Arch Microbiol 191:221-32. 2009
  4. pmc Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
    Eoin L Brodie
    Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA 94720, USA
    Appl Environ Microbiol 72:6288-98. 2006
  5. pmc Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough
    Aindrila Mukhopadhyay
    Berkeley Center for Synthetic Biology, 717 Potter Street, Berkeley, CA 94720, USA
    J Bacteriol 189:5996-6010. 2007
  6. ncbi request reprint Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment
    Tetsu K Tokunaga
    Lawrence Berkeley National Laboratory, Berkeley, California 94720, and University of California, Berkeley, California 94720, USA
    Environ Sci Technol 42:8901-7. 2008
  7. doi request reprint Environmental genomics reveals a single-species ecosystem deep within Earth
    Dylan Chivian
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Science 322:275-8. 2008
  8. ncbi request reprint Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment
    Jiamin Wan
    Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Environ Sci Technol 42:7573-9. 2008
  9. pmc PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip
    Kristen M DeAngelis
    Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Appl Environ Microbiol 77:6313-22. 2011
  10. pmc Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
    Olivia U Mason
    Ecology Department, Lawrence Berkeley National Laboratory, One Cyclotron Rd, Berkeley, CA 94720, USA
    ISME J 6:1715-27. 2012

Detail Information

Publications39

  1. pmc Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization
    Michael J Dougherty
    The Joint Bioenergy Institute, Emeryville, USA
    BMC Biotechnol 12:38. 2012
    ....
  2. doi request reprint Deep-sea oil plume enriches indigenous oil-degrading bacteria
    Terry C Hazen
    MS 70A 3317, One Cyclotron Road, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Science 330:204-8. 2010
    ..Based on these results, the potential exists for intrinsic bioremediation of the oil plume in the deep-water column without substantial oxygen drawdown...
  3. doi request reprint Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCE
    Terry C Hazen
    Lawrence Berkeley National Laboratory, Center for Environmental Biotechnology, MS 70A 3317, One Cyclotron Rd, Berkeley, CA 94720, USA
    Arch Microbiol 191:221-32. 2009
    ..This study demonstrates that the use of nucleic acid analytical methods provided a gene specific assessment of the effects of in situ treatment technologies...
  4. pmc Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
    Eoin L Brodie
    Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA 94720, USA
    Appl Environ Microbiol 72:6288-98. 2006
    ..High-density phylogenetic microarrays constitute a powerful tool, enabling the detection and monitoring of a substantial portion of the microbial population in a routine, accurate, and reproducible manner...
  5. pmc Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough
    Aindrila Mukhopadhyay
    Berkeley Center for Synthetic Biology, 717 Potter Street, Berkeley, CA 94720, USA
    J Bacteriol 189:5996-6010. 2007
    ..vulgaris and suggest that while exposure to air is highly detrimental to D. vulgaris, this bacterium can successfully cope with periodic exposure to low O(2) levels in its environment...
  6. ncbi request reprint Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment
    Tetsu K Tokunaga
    Lawrence Berkeley National Laboratory, Berkeley, California 94720, and University of California, Berkeley, California 94720, USA
    Environ Sci Technol 42:8901-7. 2008
    ..These offsetting influences will require careful control of OC supply rates in order to optimize bioreduction-based U stabilization...
  7. doi request reprint Environmental genomics reveals a single-species ecosystem deep within Earth
    Dylan Chivian
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Science 322:275-8. 2008
    ....
  8. ncbi request reprint Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment
    Jiamin Wan
    Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Environ Sci Technol 42:7573-9. 2008
    ..The data also suggested that low OC concentrations could not sustain the reducing condition of the sediment for much longer time. Bioreduced U(IV) is not sustainable in an oxidizing environment for a very long time...
  9. pmc PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip
    Kristen M DeAngelis
    Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Appl Environ Microbiol 77:6313-22. 2011
    ....
  10. pmc Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
    Olivia U Mason
    Ecology Department, Lawrence Berkeley National Laboratory, One Cyclotron Rd, Berkeley, CA 94720, USA
    ISME J 6:1715-27. 2012
    ..These data point towards a rapid response of members of the Oceanospirillales to aliphatic hydrocarbons in the deep sea...
  11. ncbi request reprint Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill
    Jacob Baelum
    MS 70A 3317, 1 Cyclotron Rd, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Environ Microbiol 14:2405-16. 2012
    ..Together these data highlight several features that provide Colwellia with the capacity to degrade oil in cold, deep marine habitats, including aggregation together with oil droplets into flocs and hydrocarbon degradation ability...
  12. doi request reprint Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater
    Eoin L Brodie
    Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, United States
    Chemosphere 85:660-5. 2011
    ..The results of these experiments demonstrate that amendment with the pHRC and MRC forms result in effective removal of Cr(VI) from solution most likely by both direct (enzymatic) and indirect (microbially generated reductant) mechanisms...
  13. ncbi request reprint Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico
    Eric A Dubinsky
    Earth Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd MS 70A 3317, Berkeley, California 94720, United States
    Environ Sci Technol 47:10860-7. 2013
    ..Multiple hydrocarbon-degrading bacteria operated simultaneously throughout the spill, but their relative importance was controlled by changes in hydrocarbon supply. ..
  14. pmc Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators
    Cindy H Wu
    Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
    PLoS ONE 5:e11285. 2010
    ..A large percentage of the urban watersheds in the United States are affected by fecal pollution, including human pathogens, thus warranting comprehensive monitoring...
  15. pmc Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis
    Qiang He
    Virtual Institute for Microbial Stress and Survival, Berkeley, California 94720, USA
    Appl Environ Microbiol 72:4370-81. 2006
    ....
  16. doi request reprint Overcoming the anaerobic hurdle in phenotypic microarrays: generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough
    Sharon Borglin
    Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    J Microbiol Methods 76:159-68. 2009
    ..The PM method promises to be a valuable strategy in our systems biology approach to D. vulgaris studies and is readily applicable to other anaerobic and aerobic bacteria...
  17. pmc High-throughput isolation and characterization of untagged membrane protein complexes: outer membrane complexes of Desulfovibrio vulgaris
    Peter J Walian
    Lawrence Berkeley National Laboratory, Berkeley, California, United States
    J Proteome Res 11:5720-35. 2012
    ..The workflow utilized here should be effective for the global characterization of membrane protein complexes in a wide range of organisms...
  18. ncbi request reprint In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound
    Boris Faybishenko
    Lawrence Berkeley National Laboratory, Berkeley, California, USA
    Environ Sci Technol 42:8478-85. 2008
    ..The degree of sustainability of Cr(VI) reductive bioimmobilization under different redox conditions at this and other contaminated sites is currently under study...
  19. pmc Survey of large protein complexes in D. vulgaris reveals great structural diversity
    Bong Gyoon Han
    Life Sciences, Genomics, Earth Sciences, and Physical Biosciences Divisions, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 106:16580-5. 2009
    ..As a consequence, we suggest that relying solely on previously determined quaternary structures for homologous proteins may not be sufficient to properly understand their role in another cell of interest...
  20. doi request reprint Systems biology approach to bioremediation
    Romy Chakraborty
    Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
    Curr Opin Biotechnol 23:483-90. 2012
    ....
  21. doi request reprint Analysis of metabolic pathways and fluxes in a newly discovered thermophilic and ethanol-tolerant Geobacillus strain
    Yinjie J Tang
    Virtual Institute for Microbial Stress and Survival, Berkeley, California, USA
    Biotechnol Bioeng 102:1377-86. 2009
    ..thermoglucosidasius M10EXG reduces the maximum ethanol yield by approximately threefold, thus indicating that both pathways should be modified to maximize ethanol production...
  22. pmc Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid
    Yinjie J Tang
    Synthetic Biology Department, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 3224, USA
    Appl Environ Microbiol 73:3859-64. 2007
    ..These findings enable a better understanding of the relationship between genome annotation and extant metabolic pathways in G. metallireducens...
  23. pmc Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometry
    Yinjie Tang
    Virtual Institute of Microbial Stress and Survival, Department of Chemical Engineering and Bioengineering, University of California, Berkeley, California, USA
    J Bacteriol 189:940-9. 2007
    ..vulgaris and also demonstrate that FT-ICR MS is a powerful tool for isotopomer analysis, overcoming the problems with both GC-MS and nuclear magnetic resonance spectroscopy...
  24. ncbi request reprint Comparison of aerobic and anaerobic biotreatment of municipal solid waste
    Sharon E Borglin
    Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    J Air Waste Manag Assoc 54:815-22. 2004
    ..Both treatment regimes provide the opportunity for disposal and remediation of liquid waste...
  25. ncbi request reprint Distribution of chromium contamination and microbial activity in soil aggregates
    Tetsu K Tokunaga
    Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    J Environ Qual 32:541-9. 2003
    ..Typical methods of soil sampling and analyses that average over redox gradients within aggregates can erase important biogeochemical spatial relations necessary for understanding these environments...
  26. ncbi request reprint Reoxidation of bioreduced uranium under reducing conditions
    Jiamin Wan
    Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    Environ Sci Technol 39:6162-9. 2005
    ..These results show that in-situ U remediation by organic carbon-based reductive precipitation can be problematic in sediments and groundwaters with neutral to alkaline pH, where uranyl carbonates are most stable...
  27. ncbi request reprint In situ reduction of chromium(VI) in heavily contaminated soils through organic carbon amendment
    Tetsu K Tokunaga
    Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    J Environ Qual 32:1641-9. 2003
    ..These results show that acceleration of in situ Cr(VI) reduction with addition of organic carbon is possible in even heavily contaminated soils and suggest that microbially dependent reduction pathways can be dominant...
  28. pmc Real-time molecular monitoring of chemical environment in obligate anaerobes during oxygen adaptive response
    Hoi Ying N Holman
    Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 106:12599-604. 2009
    ..This ability to monitor chemical changes at the molecular level can yield important insights into a wide range of adaptive responses...
  29. doi request reprint Use of immunomagnetic separation for the detection of Desulfovibrio vulgaris from environmental samples
    Romy Chakraborty
    Lawrence Berkeley National Laboratory, Berkeley, CA, USA
    J Microbiol Methods 86:204-9. 2011
    ..Field deployable IMS technology may greatly facilitate environmental sampling and bioremediation process monitoring and enable transcriptomics and proteomics/metabolomics-based studies directly on cells collected from the field...
  30. pmc Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough
    Swapnil R Chhabra
    Virtual Institute of Microbial Stress and Survival, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
    PLoS ONE 6:e21470. 2011
    ..These include the distinct role of the putative carbon monoxide-induced hydrogenase, unique electron transfer routes associated with different oxidoreductases, and the possible role of methylation in regulating sulfate reduction...
  31. pmc Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
    Olivia U Mason
    1 Department of Earth, Ocean and Atmospheric Science, Florida State University, Tallahassee, FL, USA 2 Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
    ISME J 8:1464-75. 2014
    ..However, PAHs were more recalcitrant to degradation, and their persistence could have deleterious impacts on the sediment ecosystem. ..
  32. ncbi request reprint Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics
    Alyssa M Redding
    Department of Chemical Engineering, University of California, Berkeley, CA 94720 3224, USA
    Brief Funct Genomic Proteomic 5:133-43. 2006
    ..Finally, a number of hypothetical proteins were among the most significant changers, indicating that there may be unknown mechanisms initiated upon nitrate stress in DvH...
  33. pmc Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20
    Jennifer V Kuehl
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
    MBio 5:e01041-14. 2014
    ..Taken together, our data set and genetic resources provide a foundation for systems-level investigation of a poorly studied group of bacteria of environmental and industrial importance...
  34. pmc Hexavalent Chromium Reduction under Fermentative Conditions with Lactate Stimulated Native Microbial Communities
    Anil C Somenahally
    ENIGMA Ecosystems and Networks Integrated with Genes and Molecular Assemblies Program, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America
    PLoS ONE 8:e83909. 2013
    ..In-situ fermentative conditions facilitated Cr(VI) reduction, and as a result 3.0 mg/L Cr(VI) did not impact the overall bacterial community structure. ..
  35. pmc Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach
    Aindrila Mukhopadhyay
    Virtual Institute of Microbial Stress and Survival, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    J Bacteriol 188:4068-78. 2006
    ..vulgaris responded similarly to the two stresses. Integration of data from multiple methods allowed us to develop a conceptual model for the salt stress response in D. vulgaris that can be compared to those in other microorganisms...
  36. ncbi request reprint Uranium reduction in sediments under diffusion-limited transport of organic carbon
    Tetsu K Tokunaga
    Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    Environ Sci Technol 39:7077-83. 2005
    ....
  37. pmc Complete genome sequence of the electricity-producing "Thermincola potens" strain JR
    Kathryne G Byrne-Bailey
    Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA
    J Bacteriol 192:4078-9. 2010
    ..Here we report the complete genome sequence of strain JR...
  38. ncbi request reprint Octomeric pyruvate-ferredoxin oxidoreductase from Desulfovibrio vulgaris
    Florian Garczarek
    Life Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
    J Struct Biol 159:9-18. 2007
    ..This study demonstrates that the strategy of intermediate resolution EM reconstruction coupled to homology modeling and docking can be powerful enough to infer the functionality of single amino acid residues...
  39. ncbi request reprint Using the stress response to monitor process control: pathways to more effective bioremediation
    Terry C Hazen
    Virtual Institute of Microbial Stress and Survival, Earth Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, USA
    Curr Opin Biotechnol 17:285-90. 2006
    ..Knowledge of the stress response in the environment will facilitate the control of bioremediation and other processes mediated by complex microbial communities...