Audrey P Gasch

Summary

Affiliation: Lawrence Berkeley National Laboratory
Country: USA

Publications

  1. ncbi request reprint The genomics of yeast responses to environmental stress and starvation
    Audrey P Gasch
    Department of Genome Science, Lawrence Berkeley National Laboratory, 1 Cyclotron Road 84 355, Berkeley, CA 94720, USA
    Funct Integr Genomics 2:181-92. 2002
  2. pmc Flexible promoter architecture requirements for coactivator recruitment
    Derek Y Chiang
    Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA
    BMC Mol Biol 7:16. 2006
  3. pmc Conservation and evolution of cis-regulatory systems in ascomycete fungi
    Audrey P Gasch
    Genome Sciences Department, Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
    PLoS Biol 2:e398. 2004
  4. pmc Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
    Audrey P Gasch
    Department of Genome Science, Life Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Genome Biol 3:RESEARCH0059. 2002
  5. ncbi request reprint Comparative genomics of the environmental stress response in ascomycete fungi
    Audrey P Gasch
    Laboratory of Genetics and Genome Center of Wisconsin, University of Wisconsin Madison, Madison, WI 53706, USA
    Yeast 24:961-76. 2007
  6. ncbi request reprint Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae
    Hiroyuki Yoshimoto
    Department of Biological Sciences, Stanford University, 371 Serra Mall, Stanford, CA 94305 5020, USA
    J Biol Chem 277:31079-88. 2002
  7. pmc Methionine sulfoxide reductase regulation of yeast lifespan reveals reactive oxygen species-dependent and -independent components of aging
    Ahmet Koc
    Department of Biochemistry, University of Nebraska, Lincoln, NE 68588 0664, USA
    Proc Natl Acad Sci U S A 101:7999-8004. 2004
  8. pmc Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates
    Daniel J Kvitek
    Laboratory of Genetics, University of Wisconsin Madison, Madison, Wisconsin, United States of America
    PLoS Genet 4:e1000223. 2008

Collaborators

Detail Information

Publications8

  1. ncbi request reprint The genomics of yeast responses to environmental stress and starvation
    Audrey P Gasch
    Department of Genome Science, Lawrence Berkeley National Laboratory, 1 Cyclotron Road 84 355, Berkeley, CA 94720, USA
    Funct Integr Genomics 2:181-92. 2002
    ..The results of these studies present insights as to how yeast cells sense and respond to each new environment, and suggest mechanisms that this organism uses to survive stressful environmental changes...
  2. pmc Flexible promoter architecture requirements for coactivator recruitment
    Derek Y Chiang
    Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA
    BMC Mol Biol 7:16. 2006
    ..We characterized the components of promoter architecture that govern the yeast transcription factors Cbf1 and Met31/32, which bind independently, but collaboratively recruit the coactivator Met4...
  3. pmc Conservation and evolution of cis-regulatory systems in ascomycete fungi
    Audrey P Gasch
    Genome Sciences Department, Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
    PLoS Biol 2:e398. 2004
    ..Our results suggest that the DNA binding specificity of these proteins has coevolved with the sequences found upstream of the Rpn4p target genes and suggest that Rpn4p has a different function in N. crassa...
  4. pmc Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
    Audrey P Gasch
    Department of Genome Science, Life Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Genome Biol 3:RESEARCH0059. 2002
    ..Because most commonly used analytical methods cannot appropriately represent these relationships, the connections between conditionally coregulated genes are often missed...
  5. ncbi request reprint Comparative genomics of the environmental stress response in ascomycete fungi
    Audrey P Gasch
    Laboratory of Genetics and Genome Center of Wisconsin, University of Wisconsin Madison, Madison, WI 53706, USA
    Yeast 24:961-76. 2007
    ..Implications for the role of this response, based on its presence or absence in fungi from disparate ecological niches, are discussed...
  6. ncbi request reprint Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae
    Hiroyuki Yoshimoto
    Department of Biological Sciences, Stanford University, 371 Serra Mall, Stanford, CA 94305 5020, USA
    J Biol Chem 277:31079-88. 2002
    ..A similar sequence, 5'-GAGGCTG-3', was identified as a common sequence motif in the upstream regions of calcineurin/ Crz1p-dependent genes. This finding is consistent with direct regulation of these genes by Crz1p...
  7. pmc Methionine sulfoxide reductase regulation of yeast lifespan reveals reactive oxygen species-dependent and -independent components of aging
    Ahmet Koc
    Department of Biochemistry, University of Nebraska, Lincoln, NE 68588 0664, USA
    Proc Natl Acad Sci U S A 101:7999-8004. 2004
    ..The data also suggest a model wherein factors implicated in aging (for example, ROS) may influence the lifespan yet not be the cause of aging...
  8. pmc Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates
    Daniel J Kvitek
    Laboratory of Genetics, University of Wisconsin Madison, Madison, Wisconsin, United States of America
    PLoS Genet 4:e1000223. 2008
    ..These results highlight the value of understanding the genetic basis of phenotypic variation and raise caution about using laboratory strains for comparative genomics...