Edward A Berry

Summary

Affiliation: Lawrence Berkeley National Laboratory
Country: USA

Publications

  1. pmc Crystallographic studies of the binding of ligands to the dicarboxylate site of Complex II, and the identity of the ligand in the "oxaloacetate-inhibited" state
    Li Shar Huang
    Physical Biosciences Division, Lawrence Berkeley National Lab, MS 64 0121, 1 Cyclotron Road, Berkeley CA 94720, USA
    Biochim Biophys Acta 1757:1073-83. 2006
  2. ncbi request reprint Observations concerning the quinol oxidation site of the cytochrome bc1 complex
    Edward A Berry
    MS 64R121, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    FEBS Lett 555:13-20. 2003
  3. ncbi request reprint Structure and function of cytochrome bc complexes
    E A Berry
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    Annu Rev Biochem 69:1005-75. 2000
  4. ncbi request reprint Crystallographic location of two Zn(2+)-binding sites in the avian cytochrome bc(1) complex
    E A Berry
    Lawrence Berkeley National Laboratory, University of California, USA
    Biochim Biophys Acta 1459:440-8. 2000
  5. pmc 3-nitropropionic acid is a suicide inhibitor of mitochondrial respiration that, upon oxidation by complex II, forms a covalent adduct with a catalytic base arginine in the active site of the enzyme
    Li Shar Huang
    Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    J Biol Chem 281:5965-72. 2006
  6. ncbi request reprint Electron transfer by domain movement in cytochrome bc1
    Z Zhang
    E O Lawrence Berkeley National Laboratory, University of California, 94720, USA
    Nature 392:677-84. 1998
  7. pmc Binding of the respiratory chain inhibitor antimycin to the mitochondrial bc1 complex: a new crystal structure reveals an altered intramolecular hydrogen-bonding pattern
    Li Shar Huang
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
    J Mol Biol 351:573-97. 2005
  8. pmc Crystallization of mitochondrial respiratory complex II from chicken heart: a membrane-protein complex diffracting to 2.0 A
    Li Shar Huang
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley CA 94720, USA
    Acta Crystallogr D Biol Crystallogr 61:380-7. 2005
  9. ncbi request reprint Crystal structure of an activated response regulator bound to its target
    S Y Lee
    Graduate Group in Biophysics, University of California, Berkeley, California 94720, USA
    Nat Struct Biol 8:52-6. 2001
  10. ncbi request reprint Crystal structure of activated CheY. Comparison with other activated receiver domains
    S Y Lee
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    J Biol Chem 276:16425-31. 2001

Collaborators

Detail Information

Publications16

  1. pmc Crystallographic studies of the binding of ligands to the dicarboxylate site of Complex II, and the identity of the ligand in the "oxaloacetate-inhibited" state
    Li Shar Huang
    Physical Biosciences Division, Lawrence Berkeley National Lab, MS 64 0121, 1 Cyclotron Road, Berkeley CA 94720, USA
    Biochim Biophys Acta 1757:1073-83. 2006
    ..It may be useful for understanding the mechanism and regulation of the enzyme to identify the malate-like intermediate and its pathway of formation from oxaloacetate or fumarate...
  2. ncbi request reprint Observations concerning the quinol oxidation site of the cytochrome bc1 complex
    Edward A Berry
    MS 64R121, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    FEBS Lett 555:13-20. 2003
    ....
  3. ncbi request reprint Structure and function of cytochrome bc complexes
    E A Berry
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    Annu Rev Biochem 69:1005-75. 2000
    ....
  4. ncbi request reprint Crystallographic location of two Zn(2+)-binding sites in the avian cytochrome bc(1) complex
    E A Berry
    Lawrence Berkeley National Laboratory, University of California, USA
    Biochim Biophys Acta 1459:440-8. 2000
    ..No zinc was bound near the putative proteolytic active site of subunits 1 and 2 (homologous to mitochondrial processing peptidase) under these conditions...
  5. pmc 3-nitropropionic acid is a suicide inhibitor of mitochondrial respiration that, upon oxidation by complex II, forms a covalent adduct with a catalytic base arginine in the active site of the enzyme
    Li Shar Huang
    Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    J Biol Chem 281:5965-72. 2006
    ....
  6. ncbi request reprint Electron transfer by domain movement in cytochrome bc1
    Z Zhang
    E O Lawrence Berkeley National Laboratory, University of California, 94720, USA
    Nature 392:677-84. 1998
    ..Such a mechanism has not previously been observed in redox protein complexes...
  7. pmc Binding of the respiratory chain inhibitor antimycin to the mitochondrial bc1 complex: a new crystal structure reveals an altered intramolecular hydrogen-bonding pattern
    Li Shar Huang
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
    J Mol Biol 351:573-97. 2005
    ..A strong density, the right size and shape for a diatomic molecule is found between the other side of the dilactone ring and the alphaA helix...
  8. pmc Crystallization of mitochondrial respiratory complex II from chicken heart: a membrane-protein complex diffracting to 2.0 A
    Li Shar Huang
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley CA 94720, USA
    Acta Crystallogr D Biol Crystallogr 61:380-7. 2005
    ....
  9. ncbi request reprint Crystal structure of an activated response regulator bound to its target
    S Y Lee
    Graduate Group in Biophysics, University of California, Berkeley, California 94720, USA
    Nat Struct Biol 8:52-6. 2001
    ....
  10. ncbi request reprint Crystal structure of activated CheY. Comparison with other activated receiver domains
    S Y Lee
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    J Biol Chem 276:16425-31. 2001
    ..This suggests that, in addition to the concerted movements of Thr(87) and Tyr(106) (Thr-Tyr coupling), formation of the Lys(109)-PO(3)(-) salt bridge is directly involved in the activation of receiver domains generally...
  11. ncbi request reprint Mitochondrial cytochrome bc1 complex
    Z Zhang
    E O Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
    Subcell Biochem 35:541-80. 2000
  12. ncbi request reprint The 2.6 A resolution structure of Rhodobacter capsulatus bacterioferritin with metal-free dinuclear site and heme iron in a crystallographic 'special position'
    D Cobessi
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
    Acta Crystallogr D Biol Crystallogr 58:29-38. 2002
    ..coli enzyme in which the site is occupied. This result suggests that the orientation of the Glu18 side chain could be constrained by this interaction...
  13. ncbi request reprint Orientation of the g-tensor axes of the Rieske subunit in the cytochrome bc1 complex
    Michael K Bowman
    W R Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, P O Box 999, K8 98, Richland, Washington 99352 0999, USA
    Biochemistry 43:430-6. 2004
    ....
  14. ncbi request reprint Exploration of ligands to the Qi site semiquinone in the bc1 complex using high-resolution EPR
    Derrick R J Kolling
    Departments of Biochemistry and Veterinary Clinical Medicine
    J Biol Chem 278:39747-54. 2003
    ..5-3.1 A for the O-N distance between the carbonyl of SQ and the nitrogen was estimated. The mechanistic significance is discussed in the context of a dynamic role for the movement of His-217 in proton transfer to the site...
  15. pmc X-Ray absorption studies of Zn2+ binding sites in bacterial, avian, and bovine cytochrome bc1 complexes
    Lisa Giachini
    Department of Physics, University of Bologna, Bologna, Italy
    Biophys J 93:2934-51. 2007
    ..As previously shown for the photosynthetic bacterial reaction center, zinc would compete with protons for binding to the His residues, thus impairing their function as proton donors/acceptors...
  16. pmc Bis-histidine-coordinated hemes in four-helix bundles: how the geometry of the bundle controls the axial imidazole plane orientations in transmembrane cytochromes of mitochondrial complexes II and III and related proteins
    Edward A Berry
    Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 East Adams Street, Syracuse, NY 13210, USA
    J Biol Inorg Chem 13:481-98. 2008
    ....