Eivind Almaas

Summary

Affiliation: Lawrence Livermore National Laboratory
Country: USA

Publications

  1. ncbi request reprint Biological impacts and context of network theory
    Eivind Almaas
    Microbial Systems Biology, Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, PO Box 808, L 452, Livermore, CA 94550, USA
    J Exp Biol 210:1548-58. 2007
  2. ncbi request reprint Optimal flux patterns in cellular metabolic networks
    Eivind Almaas
    Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, California 94551, USA
    Chaos 17:026107. 2007
  3. pmc Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach
    Ali Navid
    Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550 0808, USA
    BMC Syst Biol 6:150. 2012
  4. pmc The activity reaction core and plasticity of metabolic networks
    Eivind Almaas
    Microbial Systems Division, Biosciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, USA
    PLoS Comput Biol 1:e68. 2005
  5. pmc Genetic noise control via protein oligomerization
    Cheol Min Ghim
    Microbial Systems Biology Group, Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue Livermore, CA 94550, USA
    BMC Syst Biol 2:94. 2008
  6. doi request reprint Systems biology of microbial communities
    Ali Navid
    Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, CA, USA
    Methods Mol Biol 500:469-94. 2009
  7. ncbi request reprint Peeling the yeast protein network
    Stefan Wuchty
    Department of Physics, University of Notre Dame, Notre Dame, IN 46556, USA
    Proteomics 5:444-9. 2005
  8. pmc Evolutionary cores of domain co-occurrence networks
    Stefan Wuchty
    Northwestern Institute of Complexity, Northwestern University, Evanston, IL, USA
    BMC Evol Biol 5:24. 2005
  9. pmc Predicting synthetic rescues in metabolic networks
    Adilson E Motter
    Department of Physics and Astronomy and Northwestern Institute on Complex Systems, Northwestern University, Evanston, IL 60208, USA
    Mol Syst Biol 4:168. 2008

Detail Information

Publications9

  1. ncbi request reprint Biological impacts and context of network theory
    Eivind Almaas
    Microbial Systems Biology, Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue, PO Box 808, L 452, Livermore, CA 94550, USA
    J Exp Biol 210:1548-58. 2007
    ....
  2. ncbi request reprint Optimal flux patterns in cellular metabolic networks
    Eivind Almaas
    Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, California 94551, USA
    Chaos 17:026107. 2007
    ..Finally, I briefly discuss the predicted activity patterns of the central carbon metabolic pathways for the sample of random environments...
  3. pmc Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach
    Ali Navid
    Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550 0808, USA
    BMC Syst Biol 6:150. 2012
    ..The method uses mRNA expression data to guide hierarchical regulation of cellular metabolism subject to the interconnectivity of the metabolic network...
  4. pmc The activity reaction core and plasticity of metabolic networks
    Eivind Almaas
    Microbial Systems Division, Biosciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, USA
    PLoS Comput Biol 1:e68. 2005
    ..Finally, we find that most current antibiotics interfering with bacterial metabolism target the core enzymes, indicating that our findings may have important implications for antimicrobial drug-target discovery...
  5. pmc Genetic noise control via protein oligomerization
    Cheol Min Ghim
    Microbial Systems Biology Group, Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, 7000 East Avenue Livermore, CA 94550, USA
    BMC Syst Biol 2:94. 2008
    ..While there have been numerous studies correlating the architecture of cellular reaction networks with noise tolerance, only a limited effort has been made to understand the dynamic role of protein-protein interactions...
  6. doi request reprint Systems biology of microbial communities
    Ali Navid
    Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, CA, USA
    Methods Mol Biol 500:469-94. 2009
    ..Thus, this set of approaches is able to address the operation and function of microbial communities on a wide range of organizational levels...
  7. ncbi request reprint Peeling the yeast protein network
    Stefan Wuchty
    Department of Physics, University of Notre Dame, Notre Dame, IN 46556, USA
    Proteomics 5:444-9. 2005
    ..Even though protein interaction data are extensively flawed, we find that our results are very robust against inaccurately determined protein interactions...
  8. pmc Evolutionary cores of domain co-occurrence networks
    Stefan Wuchty
    Northwestern Institute of Complexity, Northwestern University, Evanston, IL, USA
    BMC Evol Biol 5:24. 2005
    ..Here, we take the next step by studying link based properties of the protein domain co-occurrence networks of the eukaryotes S. cerevisiae, C. elegans, D. melanogaster, M. musculus and H. sapiens...
  9. pmc Predicting synthetic rescues in metabolic networks
    Adilson E Motter
    Department of Physics and Astronomy and Northwestern Institute on Complex Systems, Northwestern University, Evanston, IL 60208, USA
    Mol Syst Biol 4:168. 2008
    ..The systematic network-based identification of compensatory rescue effects may open new avenues for genetic interventions...