Gagan A Pandya

Summary

Affiliation: J. Craig Venter Institute
Country: USA

Publications

  1. pmc Assessing the utility of whole-genome amplified serum DNA for array-based high throughput genotyping
    KRISTINE L BUCASAS
    Department of Immunology, Baylor College of Medicine, Houston, TX 77030, USA
    BMC Genet 10:85. 2009
  2. pmc Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay
    Gagan A Pandya
    Pathogen Functional Genomics Resource Center, J Craig Venter Institute, Rockville, MD 20850, USA
    BMC Microbiol 9:213. 2009
  3. pmc Monitoring the long-term molecular epidemiology of the pneumococcus and detection of potential 'vaccine escape' strains
    Gagan A Pandya
    Pathogen Functional Genomics Resource Center, J Craig Venter Institute, Rockville, Maryland, United States of America
    PLoS ONE 6:e15950. 2011
  4. pmc A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip whole-genome resequencing platform
    Gagan A Pandya
    Pathogen Functional Genomics Resource Center, The Institute for Genomic Research at the J Craig Venter Institute, Rockville, MD 20850, USA
    Nucleic Acids Res 35:e148. 2007
  5. pmc High quality protein microarray using in situ protein purification
    Keehwan Kwon
    Pathogen Functional Genomics Resource Center, J Craig Venter Institute, 9704 Medical Center Drive, Rockville, Maryland 20850, USA
    BMC Biotechnol 9:72. 2009

Detail Information

Publications5

  1. pmc Assessing the utility of whole-genome amplified serum DNA for array-based high throughput genotyping
    KRISTINE L BUCASAS
    Department of Immunology, Baylor College of Medicine, Houston, TX 77030, USA
    BMC Genet 10:85. 2009
    ..This study provides a realistic and high-precision assessment of WGA DNA genotyping performance from 20-year old archived serum samples using the Affymetrix Genome-Wide Human SNP Array 6.0 (SNP6.0) platform...
  2. pmc Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay
    Gagan A Pandya
    Pathogen Functional Genomics Resource Center, J Craig Venter Institute, Rockville, MD 20850, USA
    BMC Microbiol 9:213. 2009
    ..However, lower cost typing schemes are necessary in order to enable typing of hundreds or even thousands of isolates...
  3. pmc Monitoring the long-term molecular epidemiology of the pneumococcus and detection of potential 'vaccine escape' strains
    Gagan A Pandya
    Pathogen Functional Genomics Resource Center, J Craig Venter Institute, Rockville, Maryland, United States of America
    PLoS ONE 6:e15950. 2011
    ....
  4. pmc A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip whole-genome resequencing platform
    Gagan A Pandya
    Pathogen Functional Genomics Resource Center, The Institute for Genomic Research at the J Craig Venter Institute, Rockville, MD 20850, USA
    Nucleic Acids Res 35:e148. 2007
    ..Our approach eliminated 91% of the false-positive single-nucleotide polymorphism calls identified in the SCHU S4 query sample, at the cost of 10.7% of the true positives, yielding a total base-calling accuracy of 99.992%...
  5. pmc High quality protein microarray using in situ protein purification
    Keehwan Kwon
    Pathogen Functional Genomics Resource Center, J Craig Venter Institute, 9704 Medical Center Drive, Rockville, Maryland 20850, USA
    BMC Biotechnol 9:72. 2009
    ..Optimized in situ purification of His-tagged recombinant proteins has the potential to become the new gold standard for cost-effective generation of high-quality and high-density protein microarrays...