Jeffrey S McLean
Affiliation: J. Craig Venter Institute
- Quantification of electron transfer rates to a solid phase electron acceptor through the stages of biofilm formation from single cells to multicellular communitiesJeffrey S McLean
The J Craig Venter Institute, San Diego, CA, USA
Environ Sci Technol 44:2721-7. 2010..These data suggest a link between the ability of a surface to accept electrons and biofilm structure development...
- Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylumJeffrey S McLean
Microbial and Environmental Genomics, J Craig Venter Institute, San Diego, CA 92121, USA
Proc Natl Acad Sci U S A 110:E2390-9. 2013..Phylogenomic analysis of conserved single-copy genes confirms that TM6SC1 is a deeply branching phylum. ..
- Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platformJeffrey S McLean
Microbial and Environmental Genomics, J Craig Venter Institute, San Diego, California 92121, USA
Genome Res 23:867-77. 2013..Here we show for the first time that it also enables comparative genomic analysis of strain variation in a pathogen captured from complex biofilm samples in a healthcare facility...
- Identifying low pH active and lactate-utilizing taxa within oral microbiome communities from healthy children using stable isotope probing techniquesJeffrey S McLean
Microbial and Environmental Genomics, The J Craig Venter Institute, San Diego, California, United States of America
PLoS ONE 7:e32219. 2012....
- Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopyJeffrey S McLean
Environmental Microbial Genomics, J Craig Venter Institute, 111 49 N Torrey Pines Rd, Suite 220, La Jolla, CA 92037, USA
ISME J 2:121-31. 2008....
- The social structure of microbial community involved in colonization resistanceXuesong He
UCLA School of Dentistry, Los Angeles, CA, USA
ISME J 8:564-74. 2014..Furthermore, our results emphasize the importance of 'Facilitation' or positive interactions in the development of community-level functions, such as colonization resistance. ..
- Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilmsJeffrey S McLean
Pacific Northwest National Laboratory, MSIN P7 50, Richland, WA 99354, United States
J Microbiol Methods 74:47-56. 2008....
- NMR methods for in situ biofilm metabolism studiesPaul D Majors
Pacific Northwest National Laboratory, MSIN K8 98, Richland, WA 99352, USA
J Microbiol Methods 62:337-44. 2005..These results represent progress toward our ultimate goal of correlating time- and depth-resolved metabolism and mass transport with gene expression in live in situ biofilms using combined NMR/optical microscopy techniques...
- The influence of cultivation methods on Shewanella oneidensis physiology and proteome expressionDwayne A Elias
Department of Biochemistry, University of Missouri Columbia, Columbia, MO 65211, USA
Arch Microbiol 189:313-24. 2008..By decreasing cell to cell variability, higher quality samples will allow for the interpretive accuracy necessary for drawing conclusions relevant to microbial systems biology research...
- An estimate of biofilm properties using an acoustic microscopeMorris S Good
Laboratory Directed Research and Development Program, Northwest National Laboratory, Richland, WA, USA
IEEE Trans Ultrason Ferroelectr Freq Control 53:1637-48. 2006..The experimental acoustic and optical systems, methods used to estimate biofilm properties, and potential applications for the resulting data are discussed...
- NMR bioreactor development for live in-situ microbial functional analysisPaul D Majors
Biological Sciences Division, Pacific Northwest National Laboratory, 3335 Q Avenue, MSIN K8 98, Richland, WA 99352, USA
J Magn Reson 192:159-66. 2008..The advantages of live in-situ microbial metabolomics analysis and its complementariness with functional genomics/systems biology methods are discussed...
- c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensisMatthew J Marshall
Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America
PLoS Biol 4:e268. 2006..In the environment, such association of UO(2) nanoparticles with biopolymers may exert a strong influence on subsequent behavior including susceptibility to oxidation by O(2) or transport in soils and sediments...
- Preparation and evaluation of spore-specific affinity-augmented bio-imprinted beadsScott D Harvey
Pacific Northwest National Laboratory, P O Box 999 MSIN P8 50, Richland, WA 99352, USA
Anal Bioanal Chem 386:211-9. 2006..The binding assay results also indicated that further refinement of the surface deactivation procedure would enhance the performance of the imprinted substrate...
- Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganismsYuri A Gorby
Pacific Northwest National Laboratory, Richland, WA 99352, USA
Proc Natl Acad Sci U S A 103:11358-63. 2006....
- Effects of varied pH, growth rate and temperature using controlled fermentation and batch culture on matrix assisted laser desorption/ionization whole cell protein fingerprintsDavid S Wunschel
Analytical Chemistry, Pacific Northwest National Laboratory, MS P8 08, PO Box 999, Richland WA 99352, USA
J Microbiol Methods 62:259-71. 2005..The effect of varying growth temperature on Y. enterocolitica was also examined. While the anticipated effects on phenotype were observed, the MALDI-MS technique provided the proper identification...