Liliana Losada

Summary

Affiliation: J. Craig Venter Institute
Country: USA

Publications

  1. pmc Large-scale transcriptional response to hypoxia in Aspergillus fumigatus observed using RNAseq identifies a novel hypoxia regulated ncRNA
    Liliana Losada
    The J Craig Venter Institute, Rockville, MD, USA
    Mycopathologia 178:331-9. 2014
  2. pmc Polysome profiling reveals broad translatome remodeling during endoplasmic reticulum (ER) stress in the pathogenic fungus Aspergillus fumigatus
    Karthik Krishnan
    Department of Pathology and Laboratory Medicine, University of Cincinnati College of Medicine, 231 Albert Sabin Way, Cincinnati, OH 45267 0529, USA
    BMC Genomics 15:159. 2014
  3. pmc Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements
    Liliana Losada
    J Craig Venter Institute, Rockville, Maryland
    Genome Biol Evol 2010:102-16. 2010
  4. pmc Genome sequencing and analysis of Yersina pestis KIM D27, an avirulent strain exempt from select agent regulation
    Liliana Losada
    J Craig Venter Institute, Rockville, Maryland, United States of America
    PLoS ONE 6:e19054. 2011
  5. pmc A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analyses
    Jyoti Shankar
    J Craig Venter Institute, 9704, Medical Center Drive, Rockville, Maryland, 20850, US
    BMC Bioinformatics 16:31. 2015
  6. pmc Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence
    Liliana Losada
    J Craig Venter Institute, Rockville, Maryland, United States of America
    PLoS Pathog 11:e1004834. 2015
  7. doi request reprint Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3
    Liliana Losada
    The J Craig Venter Institute, Rockville, MD, USA
    FEMS Microbiol Lett 352:165-73. 2014
  8. pmc Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements
    Catherine M Ronning
    J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA
    BMC Microbiol 10:202. 2010
  9. doi request reprint Whole genome sequencing of diverse Shiga toxin-producing and non-producing Escherichia coli strains reveals a variety of virulence and novel antibiotic resistance plasmids
    Liliana Losada
    J Craig Venter Institute, Rockville, MD, USA Electronic address
    Plasmid 83:8-11. 2016
  10. pmc Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract
    Jyoti Shankar
    J Craig Venter Institute, Rockville, MD, USA
    Sci Rep 5:8131. 2015

Collaborators

Detail Information

Publications12

  1. pmc Large-scale transcriptional response to hypoxia in Aspergillus fumigatus observed using RNAseq identifies a novel hypoxia regulated ncRNA
    Liliana Losada
    The J Craig Venter Institute, Rockville, MD, USA
    Mycopathologia 178:331-9. 2014
    ..fumigatus that include expression of protein-coding and ncRNA genes. The role of these ncRNA genes in regulating the fungal hypoxia response is an exciting future research direction...
  2. pmc Polysome profiling reveals broad translatome remodeling during endoplasmic reticulum (ER) stress in the pathogenic fungus Aspergillus fumigatus
    Karthik Krishnan
    Department of Pathology and Laboratory Medicine, University of Cincinnati College of Medicine, 231 Albert Sabin Way, Cincinnati, OH 45267 0529, USA
    BMC Genomics 15:159. 2014
    ..In this study, a global analysis of transcript-specific translational regulation was performed in the pathogenic mold Aspergillus fumigatus to determine the nature and scope of the translational response to ER stress...
  3. pmc Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements
    Liliana Losada
    J Craig Venter Institute, Rockville, Maryland
    Genome Biol Evol 2010:102-16. 2010
    ....
  4. pmc Genome sequencing and analysis of Yersina pestis KIM D27, an avirulent strain exempt from select agent regulation
    Liliana Losada
    J Craig Venter Institute, Rockville, Maryland, United States of America
    PLoS ONE 6:e19054. 2011
    ..For purposes of obtaining high quality genome sequence differences between strains, any identified differences should be verified in both the new and reference genomes...
  5. pmc A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analyses
    Jyoti Shankar
    J Craig Venter Institute, 9704, Medical Center Drive, Rockville, Maryland, 20850, US
    BMC Bioinformatics 16:31. 2015
    ..Although such models are popular in fields as diverse as economics and genetics, their performance on microbiome data has been largely unexplored...
  6. pmc Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence
    Liliana Losada
    J Craig Venter Institute, Rockville, Maryland, United States of America
    PLoS Pathog 11:e1004834. 2015
    ..This approach can be applied to multiple areas of interest in A. fumigatus or other heterothallic pathogens, especially for virulence associated traits. ..
  7. doi request reprint Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3
    Liliana Losada
    The J Craig Venter Institute, Rockville, MD, USA
    FEMS Microbiol Lett 352:165-73. 2014
    ..Comparative analysis suggests that the mitochondrial genome of R. solani is an example of a dynamic history of expansion in filamentous fungi...
  8. pmc Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements
    Catherine M Ronning
    J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA
    BMC Microbiol 10:202. 2010
    ..These GIs may provide some strains with a competitive advantage in the environment and/or in the host relative to other strains...
  9. doi request reprint Whole genome sequencing of diverse Shiga toxin-producing and non-producing Escherichia coli strains reveals a variety of virulence and novel antibiotic resistance plasmids
    Liliana Losada
    J Craig Venter Institute, Rockville, MD, USA Electronic address
    Plasmid 83:8-11. 2016
    ..coli groups can be found in E. coli strains and serotypes regardless of the isolate's source and therefore, is consistent with the premise that these mobile elements carrying these traits may be broadly disseminated among E. coli. ..
  10. pmc Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract
    Jyoti Shankar
    J Craig Venter Institute, Rockville, MD, USA
    Sci Rep 5:8131. 2015
    ..Overall, antibiotic-induced changes in the bacterial microbiome were much more consistent determinants of C. albicans colonization than either the GI fungal microbiota or the GI immune response. ..