Adam J Bogdanove

Summary

Affiliation: Iowa State University
Country: USA

Publications

  1. doi TAL effectors: customizable proteins for DNA targeting
    Adam J Bogdanove
    Department of Plant Pathology, 351 Bessey Hall, Iowa State University, Ames, IA 50011, USA
    Science 333:1843-6. 2011
  2. pmc A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes
    Young Su Seo
    Department of Plant Pathology, University of California, Davis, CA 95616, USA
    BMC Microbiol 8:99. 2008
  3. pmc Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
    Steven L Salzberg
    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA
    BMC Genomics 9:204. 2008
  4. pmc The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers
    Prabhu B Patil
    Centre for Cellular and Molecular Biology, Hyderabad 500007, India
    BMC Evol Biol 7:243. 2007
  5. ncbi Protein-protein interactions in pathogen recognition by plants
    Adam J Bogdanove
    Department of Plant Pathology, Iowa State University, 351 Bessey Hall, Ames, IA 50011, USA
    Plant Mol Biol 50:981-9. 2002
  6. pmc Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp
    Adam J Bogdanove
    Department of Plant Pathology, Iowa State University, 351 Bessey Hall, Iowa State University, Ames, IA 50011, USA
    J Bacteriol 193:5450-64. 2011
  7. pmc Novel candidate virulence factors in rice pathogen Xanthomonas oryzae pv. oryzicola as revealed by mutational analysis
    Li Wang
    Department of Plant Pathology, 351 Bessey Hall, Iowa State University, Ames, IA 50011, USA
    Appl Environ Microbiol 73:8023-7. 2007
  8. pmc Arabidopsis and Brachypodium distachyon transgenic plants expressing Aspergillus nidulans acetylesterases have decreased degree of polysaccharide acetylation and increased resistance to pathogens
    Gennady Pogorelko
    Roy J Carver Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, Iowa 50011, USA
    Plant Physiol 162:9-23. 2013
  9. doi Addition of transcription activator-like effector binding sites to a pathogen strain-specific rice bacterial blight resistance gene makes it effective against additional strains and against bacterial leaf streak
    Aaron W Hummel
    Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA
    New Phytol 195:883-93. 2012
  10. pmc Requirement of the lipopolysaccharide O-chain biosynthesis gene wxocB for type III secretion and virulence of Xanthomonas oryzae pv. Oryzicola
    Li Wang
    Department of Plant Pathology, Iowa State University, Ames, Iowa, USA
    J Bacteriol 195:1959-69. 2013

Collaborators

Detail Information

Publications22

  1. doi TAL effectors: customizable proteins for DNA targeting
    Adam J Bogdanove
    Department of Plant Pathology, 351 Bessey Hall, Iowa State University, Ames, IA 50011, USA
    Science 333:1843-6. 2011
    ....
  2. pmc A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes
    Young Su Seo
    Department of Plant Pathology, University of California, Davis, CA 95616, USA
    BMC Microbiol 8:99. 2008
    ..XOM2, a minimal medium previously reported to induce hrp genes in Xoo strain T7174...
  3. pmc Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
    Steven L Salzberg
    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA
    BMC Genomics 9:204. 2008
    ..We report here on the complete genome sequence of strain PXO99A and its comparison to two previously sequenced strains, KACC10331 and MAFF311018, which are highly similar to one another...
  4. pmc The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers
    Prabhu B Patil
    Centre for Cellular and Molecular Biology, Hyderabad 500007, India
    BMC Evol Biol 7:243. 2007
    ..This variation has been proposed to play a role in evading the host immune system. Even though LPS is a modulator of plant defense responses, reports of interstrain variation in LPS gene clusters of plant pathogenic bacteria are rare...
  5. ncbi Protein-protein interactions in pathogen recognition by plants
    Adam J Bogdanove
    Department of Plant Pathology, Iowa State University, 351 Bessey Hall, Ames, IA 50011, USA
    Plant Mol Biol 50:981-9. 2002
    ..This article reviews the protein-protein interactions that have been described in pathogen recognition by plants, and provides examples of how rapid future progress will hinge on the adoption of new and developing technologies...
  6. pmc Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp
    Adam J Bogdanove
    Department of Plant Pathology, Iowa State University, 351 Bessey Hall, Iowa State University, Ames, IA 50011, USA
    J Bacteriol 193:5450-64. 2011
    ....
  7. pmc Novel candidate virulence factors in rice pathogen Xanthomonas oryzae pv. oryzicola as revealed by mutational analysis
    Li Wang
    Department of Plant Pathology, 351 Bessey Hall, Iowa State University, Ames, IA 50011, USA
    Appl Environ Microbiol 73:8023-7. 2007
    ....
  8. pmc Arabidopsis and Brachypodium distachyon transgenic plants expressing Aspergillus nidulans acetylesterases have decreased degree of polysaccharide acetylation and increased resistance to pathogens
    Gennady Pogorelko
    Roy J Carver Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, Iowa 50011, USA
    Plant Physiol 162:9-23. 2013
    ..These results demonstrate a role, in both monocot and dicot plants, of hemicellulose and pectin acetylation in plant defense against fungal pathogens...
  9. doi Addition of transcription activator-like effector binding sites to a pathogen strain-specific rice bacterial blight resistance gene makes it effective against additional strains and against bacterial leaf streak
    Aaron W Hummel
    Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA
    New Phytol 195:883-93. 2012
    ..Thus, executor gene specificity can be broadened by adding EBEs, but caution is warranted because of the possible coincident introduction of endogenous regulatory elements...
  10. pmc Requirement of the lipopolysaccharide O-chain biosynthesis gene wxocB for type III secretion and virulence of Xanthomonas oryzae pv. Oryzicola
    Li Wang
    Department of Plant Pathology, Iowa State University, Ames, Iowa, USA
    J Bacteriol 195:1959-69. 2013
    ..Thus, virulence of the wxocB mutant is likely reduced due primarily to a direct, possibly structural, effect of the loss of the O chain on type III delivery of effector proteins...
  11. pmc Targeting DNA double-strand breaks with TAL effector nucleases
    Michelle Christian
    Department of Plant Pathology, Iowa State University, Ames, Iowa 50011, USA
    Genetics 186:757-61. 2010
    ..Both native and custom TALE-nuclease fusions direct DNA double-strand breaks to specific, targeted sites...
  12. pmc Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in xanthomonas
    Hong Lu
    Department of Genetics Development and Cell Biology, Iowa State University, Ames, Iowa, United States of America
    PLoS ONE 3:e3828. 2008
    ..Collectively, members cause diseases on over 392 plant species. Individually, they exhibit marked host- and tissue-specificity. The determinants of this specificity are unknown...
  13. ncbi Inhibition of resistance gene-mediated defense in rice by Xanthomonas oryzae pv. oryzicola
    Seiko Makino
    Department of Plant Pathology, Iowa State University, Ames, IA 50014, USA
    Mol Plant Microbe Interact 19:240-9. 2006
    ..Inhibition of R gene-mediated defense by X. oryzae pv. oryzicola may explain, in part, the apparent lack of major gene resistance to leaf streak...
  14. pmc TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction
    Erin L Doyle
    Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA
    Nucleic Acids Res 40:W117-22. 2012
    ..Applications range from designing highly specific DNA targeting tools and identifying potential off-target sites to predicting effector targets important in plant disease...
  15. doi A simple cipher governs DNA recognition by TAL effectors
    Matthew J Moscou
    Department of Plant Pathology and Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, USA
    Science 326:1501. 2009
    ..Our finding represents a previously unknown mechanism for protein-DNA recognition that explains TAL effector specificity, enables target site prediction, and opens prospects for use of TAL effectors in research and biotechnology...
  16. ncbi Pseudomonas syringae effector avrB confers soybean cultivar-specific avirulence on Soybean mosaic virus adapted for transgene expression but effector avrPto does not
    Li Wang
    Department of Plant Pathology, 351 Bessey Hall, Iowa State University, Ames 50011, USA
    Mol Plant Microbe Interact 19:304-12. 2006
    ..The results also led to a reevaluation of the reported avirulence activity of avrPto in this plant...
  17. pmc TAL effector specificity for base 0 of the DNA target is altered in a complex, effector- and assay-dependent manner by substitutions for the tryptophan in cryptic repeat -1
    Erin L Doyle
    Department of Plant Pathology and Microbiology, Iowa State University, Ames, Iowa, United States of America
    PLoS ONE 8:e82120. 2013
    ..Generating TAL effector scaffolds with high activity that robustly accommodate sites without a T at position 0 may require larger scale re-engineering. ..
  18. ncbi Transcript profiling in host-pathogen interactions
    Roger P Wise
    Corn Insects and Crop Genetics Research, USDA ARS, Iowa State University, Ames, Iowa 50011 1020, USA
    Annu Rev Phytopathol 45:329-69. 2007
    ..In this way, genomic technologies have facilitated a system-wide approach to unifying themes and unique features in the interactions of hosts and pathogens...
  19. doi Code-Assisted Discovery of TAL Effector Targets in Bacterial Leaf Streak of Rice Reveals Contrast with Bacterial Blight and a Novel Susceptibility Gene
    Raul A Cernadas
    Department of Plant Pathology and Microbiology, Iowa State University, Ames, Iowa, United States of America Department of Plant Pathology and Plant Microbe Biology, Cornell University, Ithaca, New York, United States of America
    PLoS Pathog 10:e1003972. 2014
    ..Our study expands the number of known TAL effector targets, identifies a new class of S gene, and improves our ability to predict functional targeting. ..
  20. pmc TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins
    Erin L Doyle
    Department of Plant Pathology and Microbiology, Iowa State University, 351 Bessey Hall, Ames, IA 50011, USA
    Trends Cell Biol 23:390-8. 2013
    ....
  21. doi TAL effectors: finding plant genes for disease and defense
    Adam J Bogdanove
    Department of Plant Pathology, Iowa State University, USA
    Curr Opin Plant Biol 13:394-401. 2010
    ..This article reviews the most significant findings in TALE research, with a focus on recent advances, and discusses future prospects including pressing questions yet to be answered...
  22. ncbi Understanding the functions of plant disease resistance proteins
    Gregory B Martin
    Boyce Thompson Institute for Plant Research and Department of Plant Pathology, Cornell University, Ithaca, New York 14853, USA
    Annu Rev Plant Biol 54:23-61. 2003
    ..New technologies arising from the genomics and proteomics revolution will greatly expand our ability to investigate the role of R proteins in plant disease resistance...