Vinayak Kapatral

Summary

Affiliation: Integrated Genomics
Country: USA

Publications

  1. pmc Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586
    Vinayak Kapatral
    Integrated Genomics, Chicago, Illinois 60612, USA
    J Bacteriol 184:2005-18. 2002
  2. pmc Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586
    Vinayak Kapatral
    Integrated Genomics Inc, Chicago, Illinois 60612, USA
    Genome Res 13:1180-9. 2003
  3. pmc Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights
    Anamitra Bhattacharyya
    Integrated Genomics, Inc, Chicago, Illinois 60612, USA
    Genome Res 12:1556-63. 2002
  4. ncbi request reprint Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis
    Iain Anderson
    Integrated Genomics, 2201 W Campbell Park Dr, Chicago, IL 60612, USA
    FEMS Microbiol Lett 250:175-84. 2005
  5. ncbi request reprint Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
    Natalia Ivanova
    Integrated Genomics, Chicago, Illinois 60612, USA
    Nature 423:87-91. 2003
  6. pmc Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains
    Anamitra Bhattacharyya
    Integrated Genomics, Inc, 2201 West Campbell Park Drive, Chicago, IL 60612, USA
    Proc Natl Acad Sci U S A 99:12403-8. 2002
  7. pmc The genetic basis of laboratory adaptation in Caulobacter crescentus
    Melissa E Marks
    Department of Biochemistry and Molecular Biology, University of Chicago, 929 East 57th Street, Chicago, IL 60637, USA
    J Bacteriol 192:3678-88. 2010
  8. pmc The ERGO genome analysis and discovery system
    Ross Overbeek
    Integrated Genomics Inc, 2201 West Campbell Park Drive, Chicago, IL 60612, USA
    Nucleic Acids Res 31:164-71. 2003
  9. ncbi request reprint Gene array analysis of Yersinia enterocolitica FlhD and FlhC: regulation of enzymes affecting synthesis and degradation of carbamoylphosphate
    Vinayak Kapatral
    Integrated Genomics, Inc, 2201 West Campbell Park Dr, Chicago, IL 60612, USA
    Microbiology 150:2289-300. 2004

Collaborators

Detail Information

Publications9

  1. pmc Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586
    Vinayak Kapatral
    Integrated Genomics, Chicago, Illinois 60612, USA
    J Bacteriol 184:2005-18. 2002
    ..The metabolic capabilities of F. nucleatum revealed by its genome are therefore consistent with its specialized niche in the mouth...
  2. pmc Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586
    Vinayak Kapatral
    Integrated Genomics Inc, Chicago, Illinois 60612, USA
    Genome Res 13:1180-9. 2003
    ..These capabilities allow Fusobacteria to survive in a mixed culture in the mouth...
  3. pmc Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights
    Anamitra Bhattacharyya
    Integrated Genomics, Inc, Chicago, Illinois 60612, USA
    Genome Res 12:1556-63. 2002
    ..We also predicted and developed a new defined growth medium for Xylella...
  4. ncbi request reprint Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis
    Iain Anderson
    Integrated Genomics, 2201 W Campbell Park Dr, Chicago, IL 60612, USA
    FEMS Microbiol Lett 250:175-84. 2005
    ..Despite a high degree of chromosomal synteny among these genomes, significant differences in cell wall and spore coat proteins that contribute to the survival and adaptation in specific hosts has been identified...
  5. ncbi request reprint Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
    Natalia Ivanova
    Integrated Genomics, Chicago, Illinois 60612, USA
    Nature 423:87-91. 2003
    ..cereus and B. anthracis, and the genes that are unique for each species. We use the former to clarify the phylogeny of the cereus group, and the latter to determine plasmid-independent species-specific markers...
  6. pmc Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains
    Anamitra Bhattacharyya
    Integrated Genomics, Inc, 2201 West Campbell Park Drive, Chicago, IL 60612, USA
    Proc Natl Acad Sci U S A 99:12403-8. 2002
    ..This study demonstrates the effectiveness of comparative analysis strategies in the interpretation of genomes that are closely related...
  7. pmc The genetic basis of laboratory adaptation in Caulobacter crescentus
    Melissa E Marks
    Department of Biochemistry and Molecular Biology, University of Chicago, 929 East 57th Street, Chicago, IL 60637, USA
    J Bacteriol 192:3678-88. 2010
    ..crescentus and clinical isolates of Pseudomonas aeruginosa that have adapted to a human host during chronic infection...
  8. pmc The ERGO genome analysis and discovery system
    Ross Overbeek
    Integrated Genomics Inc, 2201 West Campbell Park Drive, Chicago, IL 60612, USA
    Nucleic Acids Res 31:164-71. 2003
    ..The current version of the system integrates 500 genomes from all domains of life in various levels of completion, 403 of which are available for subscription...
  9. ncbi request reprint Gene array analysis of Yersinia enterocolitica FlhD and FlhC: regulation of enzymes affecting synthesis and degradation of carbamoylphosphate
    Vinayak Kapatral
    Integrated Genomics, Inc, 2201 West Campbell Park Dr, Chicago, IL 60612, USA
    Microbiology 150:2289-300. 2004
    ..These data are consistent with the hypothesis that temperature regulation of flagella genes might be mediated by the flagella-specific sigma factor FliA and not the flagella master regulator FlhD/FlhC...