Nichole L King
Affiliation: Institute for Systems Biology
- Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometryFrank Desiere
Nestle Research Center, 1000 Lausanne 26, Switzerland
Genome Biol 6:R9. 2005..This resource could serve as an expandable repository for MS-derived proteome information...
- Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlasNichole L King
Institute for Systems Biology, N 34th Street, Seattle, WA 98103, USA
Genome Biol 7:R106. 2006..We highlight the use of this resource for data mining, construction of high quality lists for targeted proteomics, validation of proteins, and software development...
- The PeptideAtlas projectFrank Desiere
Institute for Systems Biology, Seattle, WA, USA
Nucleic Acids Res 34:D655-8. 2006..Here we present a summary of our process and details about the Human, Drosophila and Yeast PeptideAtlas builds...
- Human Plasma PeptideAtlasEric W Deutsch
Institute for Systems Biology, Seattle, WA 98103, USA
Proteomics 5:3497-500. 2005..The resulting compendium of peptides and their associated samples, proteins, and genes is made publicly available as a reference for future research on human plasma...
- Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coveragePhu T Van
Institute for Systems Biology, 1441 North 34th Street, Seattle, Washington 98103, USA
J Proteome Res 7:3755-64. 2008..Therefore, despite identifying at least one proteotypic peptide for almost all proteins in the PA, a context-dependent selection of proteotypic peptides appears to be the most effective approach for targeted proteomics...
- Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoringVinzenz Lange
Institute of Molecular Systems Biology, ETH Zurich, Zurich 8093, Switzerland
Mol Cell Proteomics 7:1489-500. 2008..The resulting quantitative protein patterns enabled us to clearly define the subset of virulence proteins that is regulated upon plasma exposure...