Nichole L King

Summary

Affiliation: Institute for Systems Biology
Country: USA

Publications

  1. pmc Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
    Frank Desiere
    Nestle Research Center, 1000 Lausanne 26, Switzerland
    Genome Biol 6:R9. 2005
  2. pmc Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas
    Nichole L King
    Institute for Systems Biology, N 34th Street, Seattle, WA 98103, USA
    Genome Biol 7:R106. 2006
  3. pmc The PeptideAtlas project
    Frank Desiere
    Institute for Systems Biology, Seattle, WA, USA
    Nucleic Acids Res 34:D655-8. 2006
  4. ncbi request reprint Human Plasma PeptideAtlas
    Eric W Deutsch
    Institute for Systems Biology, Seattle, WA 98103, USA
    Proteomics 5:3497-500. 2005
  5. pmc Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage
    Phu T Van
    Institute for Systems Biology, 1441 North 34th Street, Seattle, Washington 98103, USA
    J Proteome Res 7:3755-64. 2008
  6. pmc Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring
    Vinzenz Lange
    Institute of Molecular Systems Biology, ETH Zurich, Zurich 8093, Switzerland
    Mol Cell Proteomics 7:1489-500. 2008

Detail Information

Publications6

  1. pmc Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
    Frank Desiere
    Nestle Research Center, 1000 Lausanne 26, Switzerland
    Genome Biol 6:R9. 2005
    ..This resource could serve as an expandable repository for MS-derived proteome information...
  2. pmc Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas
    Nichole L King
    Institute for Systems Biology, N 34th Street, Seattle, WA 98103, USA
    Genome Biol 7:R106. 2006
    ..We highlight the use of this resource for data mining, construction of high quality lists for targeted proteomics, validation of proteins, and software development...
  3. pmc The PeptideAtlas project
    Frank Desiere
    Institute for Systems Biology, Seattle, WA, USA
    Nucleic Acids Res 34:D655-8. 2006
    ..Here we present a summary of our process and details about the Human, Drosophila and Yeast PeptideAtlas builds...
  4. ncbi request reprint Human Plasma PeptideAtlas
    Eric W Deutsch
    Institute for Systems Biology, Seattle, WA 98103, USA
    Proteomics 5:3497-500. 2005
    ..The resulting compendium of peptides and their associated samples, proteins, and genes is made publicly available as a reference for future research on human plasma...
  5. pmc Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage
    Phu T Van
    Institute for Systems Biology, 1441 North 34th Street, Seattle, Washington 98103, USA
    J Proteome Res 7:3755-64. 2008
    ..Therefore, despite identifying at least one proteotypic peptide for almost all proteins in the PA, a context-dependent selection of proteotypic peptides appears to be the most effective approach for targeted proteomics...
  6. pmc Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring
    Vinzenz Lange
    Institute of Molecular Systems Biology, ETH Zurich, Zurich 8093, Switzerland
    Mol Cell Proteomics 7:1489-500. 2008
    ..The resulting quantitative protein patterns enabled us to clearly define the subset of virulence proteins that is regulated upon plasma exposure...