Mi Youn Brusniak

Summary

Affiliation: Institute for Systems Biology
Country: USA

Publications

  1. pmc Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
    Mi Youn Brusniak
    Institute for Systems Biology, 1441 North 34th Street, Seattle, WA 98103, USA
    BMC Bioinformatics 9:542. 2008
  2. pmc The Protein Information and Property Explorer 2: gaggle-like exploration of biological proteomic data within one webpage
    Hector Ramos
    Institute for Systems Biology, Seattle, WA 98103, USA
    Proteomics 11:154-8. 2011
  3. pmc PASSEL: the PeptideAtlas SRMexperiment library
    Terry Farrah
    Institute for Systems Biology, Seattle, WA 98109, USA
    Proteomics 12:1170-5. 2012
  4. pmc Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry
    Hamid Mirzaei
    Institute for Systems Biology, Seattle, Washington 98103, USA
    Mol Cell Proteomics 8:1934-46. 2009
  5. pmc TraML--a standard format for exchange of selected reaction monitoring transition lists
    Eric W Deutsch
    Institute for Systems Biology, Seattle, Washington 98109, USA
    Mol Cell Proteomics 11:R111.015040. 2012
  6. ncbi The Protein Information and Property Explorer 2: Gaggle-like exploration of biological proteomic data within one webpage
    Hector Ramos
    Institute for Systems Biology, Seattle, WA, USA
    Proteomics 11:154-8. 2011

Collaborators

Detail Information

Publications6

  1. pmc Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
    Mi Youn Brusniak
    Institute for Systems Biology, 1441 North 34th Street, Seattle, WA 98103, USA
    BMC Bioinformatics 9:542. 2008
    ..These limitations, along with the array of choices, present a daunting prospect for biologists, and other researchers not trained in bioinformatics, who wish to use LC-MS-based quantitative proteomics...
  2. pmc The Protein Information and Property Explorer 2: gaggle-like exploration of biological proteomic data within one webpage
    Hector Ramos
    Institute for Systems Biology, Seattle, WA 98103, USA
    Proteomics 11:154-8. 2011
    ..Additionally, PIPE2 implements a framework within which new analysis procedures can be easily deployed and distributed over the World Wide Web. PIPE2 is available as a web service at http://pipe2.systemsbiology.net/...
  3. pmc PASSEL: the PeptideAtlas SRMexperiment library
    Terry Farrah
    Institute for Systems Biology, Seattle, WA 98109, USA
    Proteomics 12:1170-5. 2012
    ..Further, PASSELwill help in the assessment of proteotypic peptide performance in a wide array of samples containing the same peptide, as well as across multiple experimental protocols...
  4. pmc Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry
    Hamid Mirzaei
    Institute for Systems Biology, Seattle, Washington 98103, USA
    Mol Cell Proteomics 8:1934-46. 2009
    ..Further use of the peptides for signal intensity normalization and retention time synchronization for selected reaction monitoring experiments is also demonstrated...
  5. pmc TraML--a standard format for exchange of selected reaction monitoring transition lists
    Eric W Deutsch
    Institute for Systems Biology, Seattle, Washington 98109, USA
    Mol Cell Proteomics 11:R111.015040. 2012
    ....
  6. ncbi The Protein Information and Property Explorer 2: Gaggle-like exploration of biological proteomic data within one webpage
    Hector Ramos
    Institute for Systems Biology, Seattle, WA, USA
    Proteomics 11:154-8. 2011
    ..Additionally, PIPE2 implements a framework within which new analysis procedures can be easily deployed and distributed over the World Wide Web. PIPE2 is available as a web service at http://pipe2.systemsbiology.net/...