G W Stuart

Summary

Affiliation: Indiana State University
Country: USA

Publications

  1. ncbi request reprint Integrated gene and species phylogenies from unaligned whole genome protein sequences
    Gary W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA
    Bioinformatics 18:100-8. 2002
  2. ncbi request reprint A comprehensive vertebrate phylogeny using vector representations of protein sequences from whole genomes
    Gary W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA
    Mol Biol Evol 19:554-62. 2002
  3. ncbi request reprint A comprehensive whole genome bacterial phylogeny using correlated peptide motifs defined in a high dimensional vector space
    Gary W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA
    J Bioinform Comput Biol 1:475-93. 2003
  4. pmc An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage
    Gary W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA
    BMC Bioinformatics 5:204. 2004
  5. ncbi request reprint A comprehensive open reading frame phylogenetic analysis of isometric positive strand ssRNA plant viruses
    G W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, Indiana 47809, USA
    Arch Virol 151:1159-77. 2006
  6. ncbi request reprint The nucleotide sequence of cowpea mottle virus and its assignment to the genus Carmovirus
    X J You
    Department of Life Sciences, Indiana State University, Terre Haute 47809, USA
    J Gen Virol 76:2841-5. 1995
  7. ncbi request reprint Developmental expression of class III and IV POU domain genes in the zebrafish
    K Sampath
    Department of Life Sciences, Indiana State University, Terre Haute 47809, USA
    Biochem Biophys Res Commun 219:565-71. 1996
  8. pmc A survey of well conserved families of C2H2 zinc-finger genes in Daphnia
    Arun Seetharam
    Department of Biology, Indiana State University, Terre Haute, IN 47809, USA
    BMC Genomics 11:276. 2010

Collaborators

Detail Information

Publications8

  1. ncbi request reprint Integrated gene and species phylogenies from unaligned whole genome protein sequences
    Gary W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA
    Bioinformatics 18:100-8. 2002
    ..Alternatively, vectors defining each of the proteins within an organism can be summed to provide a vector representation of the organism, which is then used to generate species trees...
  2. ncbi request reprint A comprehensive vertebrate phylogeny using vector representations of protein sequences from whole genomes
    Gary W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA
    Mol Biol Evol 19:554-62. 2002
    ..Alternatively, the vector representations of genes from individual species can be summed, allowing species trees to be produced...
  3. ncbi request reprint A comprehensive whole genome bacterial phylogeny using correlated peptide motifs defined in a high dimensional vector space
    Gary W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA
    J Bioinform Comput Biol 1:475-93. 2003
    ..This analysis represents the most detailed simultaneous comparison of prokaryotic genes and species available to date...
  4. pmc An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage
    Gary W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA
    BMC Bioinformatics 5:204. 2004
    ..As an alternative, highly efficient methods that do not require the pre-alignment of operationally defined orthologs are also being explored...
  5. ncbi request reprint A comprehensive open reading frame phylogenetic analysis of isometric positive strand ssRNA plant viruses
    G W Stuart
    Department of Life Sciences, Indiana State University, Terre Haute, Indiana 47809, USA
    Arch Virol 151:1159-77. 2006
    ..The evidence for frequent gene sharing and the potential consequences to viral taxonomy are discussed...
  6. ncbi request reprint The nucleotide sequence of cowpea mottle virus and its assignment to the genus Carmovirus
    X J You
    Department of Life Sciences, Indiana State University, Terre Haute 47809, USA
    J Gen Virol 76:2841-5. 1995
    ..Comparison of the physicochemical properties, genomic arrangement, and predicted amino acid sequences with those of other viruses justify the assignment of CPMoV to the genus Carmovirus, family Tombusviridae...
  7. ncbi request reprint Developmental expression of class III and IV POU domain genes in the zebrafish
    K Sampath
    Department of Life Sciences, Indiana State University, Terre Haute 47809, USA
    Biochem Biophys Res Commun 219:565-71. 1996
    ..Since two of the POU PCR clones were obtained from genomic DNA, the fish genes may also be similar to their mammalian homologs in being largely devoid of introns...
  8. pmc A survey of well conserved families of C2H2 zinc-finger genes in Daphnia
    Arun Seetharam
    Department of Biology, Indiana State University, Terre Haute, IN 47809, USA
    BMC Genomics 11:276. 2010
    ..e. worms, flies, and humans). Here we extend that analysis to include a second arthropod genome from the crustacean, Daphnia pulex...