Research Topics
Genomes and Genes | Peter RoachSummaryAffiliation: Indiana University Country: USA Publications
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Publications
Glycogen and its metabolism: some new developments and old themesPeter J Roach
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, USA
Biochem J 441:763-87. 2012....
Are there errors in glycogen biosynthesis and is laforin a repair enzyme?Peter J Roach
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indiana, USA
FEBS Lett 585:3216-8. 2011..The hypothesis is that glycogen phosphorylation can be considered a catalytic error and laforin a repair enzyme...
Glycogen and its metabolismPeter J Roach
Department of Biochemistry and Molecular Biology, and Center for Diabetes Research, Indiana University School of Medicine, IUPUI, Indianapolis 46202, USA
Curr Mol Med 2:101-20. 2002..Defects in the basic metabolizing enzymes lead to severe consequences whereas, with some exceptions, mutations in the regulatory proteins appear to cause a more subtle phenotypic change...
Crystal structure of the autocatalytic initiator of glycogen biosynthesis, glycogeninBrian J Gibbons
Department of Biochemistry and Molecular Biology and Center for Diabetes Research, Indiana University School of Medicine, 635 Barnhill Drive Indianapolis, IN 46202 5122, USA
J Mol Biol 319:463-77. 2002..Possibly the initial glucosylation is via inter-dimeric catalysis with an intra-molecular mechanism employed later in oligosaccharide synthesis...
GNIP, a novel protein that binds and activates glycogenin, the self-glucosylating initiator of glycogen biosynthesisAlexander V Skurat
Department of Biochemistry and Molecular Biology and Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA
J Biol Chem 277:19331-8. 2002..GNIPs may represent a novel participant in the initiation of glycogen synthesis...
Structural basis for glucose-6-phosphate activation of glycogen synthaseSulochanadevi Baskaran
Department of Biochemistry and Molelcular Biology, Indiana University School of Medicine, Indianapolis, IN 46202 5122, USA
Proc Natl Acad Sci U S A 107:17563-8. 2010....
Exercise capacity of mice genetically lacking muscle glycogen synthase: in mice, muscle glycogen is not essential for exerciseBartholomew A Pederson
Department of Biochemistry and Molecular Biology and Indiana University Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, Indiana 46202 5122, USA
J Biol Chem 280:17260-5. 2005..These studies provide genetic evidence that in mice muscle glycogen is not essential for strenuous exercise and has relatively little effect on endurance...
Regulation of yeast glycogen phosphorylase by the cyclin-dependent protein kinase Pho85pWayne A Wilson
Department of Biochemistry and Molecular Biology, Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, IN 46202, USA
Biochem Biophys Res Commun 329:161-7. 2005..Here, we show that the cyclin-dependent protein kinase, Pho85p, which we have previously found to regulate glycogen synthase also controls the phosphorylation state of phosphorylase...
Requirements for catalysis in mammalian glycogeninThomas D Hurley
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202 5122, USA
J Biol Chem 280:23892-9. 2005..These data support a role for aspartate 162 in the chemical step for the glucosyltransferase reaction and a role for aspartate 159 in binding and activating the acceptor molecule...
Direct detection of glycogenin reaction products during glycogen initiationThomas D Hurley
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202 5122, USA
Biochem Biophys Res Commun 348:374-8. 2006..The results from this assay provide new insight into the mechanism by which glycogenin catalyzes the initiation reaction...
Interaction between glycogenin and glycogen synthaseAlexander V Skurat
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202 5122, USA
Arch Biochem Biophys 456:93-7. 2006..We demonstrate that the COOH-terminal fragment of glycogenin can be used as an effective high affinity reagent for the purification of glycogen synthase from skeletal muscle and liver...
Genetic depletion of the malin E3 ubiquitin ligase in mice leads to lafora bodies and the accumulation of insoluble laforinAnna A Depaoli-Roach
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202 5122, USA
J Biol Chem 285:25372-81. 2010....
Glycogen and related polysaccharides inhibit the laforin dual-specificity protein phosphataseWei Wang
Department of Biochemistry and Molecular Biology, Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, IN 46202, USA
Biochem Biophys Res Commun 325:726-30. 2004....
Abnormal cardiac development in the absence of heart glycogenBartholomew A Pederson
Department of Biochemistry and Molecular Biology, School of Medicine, Indiana University, Indianapolis, IN 46202 5122, USA
Mol Cell Biol 24:7179-87. 2004....
Saccharomyces gene deletion project: applications and use in the study of protein kinases and phosphatasesWayne A Wilson
Department of Biochemistry and Molecular Biology, Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA
Methods Enzymol 366:403-18. 2003
Analysis of respiratory mutants reveals new aspects of the control of glycogen accumulation by the cyclin-dependent protein kinase Pho85pWayne A Wilson
Department of Biochemistry, Indiana University School of Medicine, 635 Barnhill Drive, Indianapolis, IN 46202 5122, USA
FEBS Lett 515:104-8. 2002..This suggested the existence of inputs from Pho85p into glycogen storage, independent of Pcl8p and Pcl10p, and acting antagonistically...
Overexpression of glycogen synthase in mouse muscle results in less branched glycogenBartholomew A Pederson
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, and Indiana University Center for Diabetes Research, Indianapolis, IN 46202 5122, USA
Biochem Biophys Res Commun 305:826-30. 2003..However, this compared with an increase in glycogen synthase of some 50-fold, so that the increase in branching enzyme in response to overexpression of glycogen synthase was insufficient to synthesize normally branched glycogen...
Glycogen metabolism in tissues from a mouse model of Lafora diseaseWei Wang
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202 5122, USA
Arch Biochem Biophys 457:264-9. 2007....
Laforin is a glycogen phosphatase, deficiency of which leads to elevated phosphorylation of glycogen in vivoVincent S Tagliabracci
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, USA
Proc Natl Acad Sci U S A 104:19262-6. 2007..This study provides a molecular link between an observed biochemical property of laforin and the phenotype of a mouse model of Lafora disease. The results also have important implications for glycogen metabolism generally...
Mutations of muscle glycogen synthase that disable activation by glucose 6-phosphateIsao Hanashiro
Department of Biochemistry and Molecular Biology and Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA
Arch Biochem Biophys 397:286-92. 2002..However, the role must differ subtly between the mammalian and the yeast enzymes...
Nutrient-regulated protein kinases in budding yeastWayne A Wilson
Department of Biochemistry and Molecular Biology, Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, IN 46202, USA
Cell 111:155-8. 2002..A recently characterized enzyme, PAS kinase, may be a new member of this group of nutritional transducers...
Glycogen synthase sensitivity to glucose-6-P is important for controlling glycogen accumulation in Saccharomyces cerevisiaeBartholomew A Pederson
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine and the Indiana University Center for Diabetes Research, Indianapolis, Indiana 46202, USA
J Biol Chem 279:13764-8. 2004..This is the first direct demonstration that activation of glycogen synthase by glucose-6-P in vivo is necessary for normal glycogen accumulation...
Systematic identification of the genes affecting glycogen storage in the yeast Saccharomyces cerevisiae: implication of the vacuole as a determinant of glycogen levelWayne A Wilson
Department of Biochemistry and Molecular Biology and Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA
Mol Cell Proteomics 1:232-42. 2002..21, 5742-5752). Autophagy delivers glycogen to the vacuole, and we propose that the impaired vacuolar function associated with ATPase mutants (vma10 or vma22) results in reduced degradation and subsequent hyperaccumulation of glycogen...
Relationship between glycogen accumulation and the laforin dual specificity phosphataseWei Wang
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202 5122, USA
Biochem Biophys Res Commun 350:588-92. 2006..We propose, therefore, that laforin senses cytosolic glycogen accumulation which in turn determines the level of laforin protein...
Gene expression profiling of mice with genetically modified muscle glycogen contentGretchen E Parker
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202 5122, USA
Biochem J 395:137-45. 2006..Particularly interesting is the observation that 11 of these genes encode cardiac or slow-twitch isoforms of muscle contractile proteins, and are upregulated in muscle that has a greater oxidative capacity in MGSKO mice...
Glucose metabolism in mice lacking muscle glycogen synthaseBartholomew A Pederson
Department of Biochemistry and Molecular Biology and Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, Indiana, USA
Diabetes 54:3466-73. 2005..Although disruption of the GYS1 gene negatively affects muscle glucose uptake, overall glucose tolerance is actually improved, possibly because of a role for GYS1 in tissues other than muscle...
Structure-function analysis of GNIP, the glycogenin-interacting proteinLanmin Zhai
Department of Biochemistry and Molecular Biology, Center for Diabetes Research, Indiana University School of Medicine, 635 Barnhill Drive, Indianapolis, IN 46202 5122, USA
Arch Biochem Biophys 421:236-42. 2004..Heterologous interactions between GNIP1 and GNIP2 were also detected. Since glycogenin is also a dimer, higher order multimeric complexes between glycogenin and GNIPs would be possible...
Mice with elevated muscle glycogen stores do not have improved exercise performanceBartholomew A Pederson
Department of Biochemistry and Molecular Biology and Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, IN 46202 5122, USA
Biochem Biophys Res Commun 331:491-6. 2005..This result suggests that increased muscle glycogen stores do not necessarily improve exercise performance in mice...
Determination of mammalian glycogen synthase phosphatase activityAnna A Depaoli-Roach
Department of Biochemistry and Molecular Biology, Center for Diabetes Research, Indiana University School of Medicine, 635 Barnhill Dr, Indianapolis, Indiana 46202, USA
Methods Enzymol 366:17-34. 2003
Starch binding domain-containing protein 1/genethonin 1 is a novel participant in glycogen metabolismSixin Jiang
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA
J Biol Chem 285:34960-71. 2010..We conclude that Stbd1 is involved in glycogen metabolism by binding to glycogen and anchoring it to membranes, thereby affecting its cellular localization and its intracellular trafficking to lysosomes...
Impaired glucose tolerance and predisposition to the fasted state in liver glycogen synthase knock-out miceJose M Irimia
Department of Biochemistry and Molecular Biology, Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA
J Biol Chem 285:12851-61. 2010..This mouse model mimics the pathophysiology of glycogen storage disease 0 patients and highlights the importance of liver glycogen stores in whole body glucose homeostasis...
Characterization of mouse UDP-glucose pyrophosphatase, a Nudix hydrolase encoded by the Nudt14 geneCandy A Heyen
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, USA
Biochem Biophys Res Commun 390:1414-8. 2009..Sequence alignments and database searches revealed related proteins in species as distant as Drosophila melanogaster and Caenorhabditis elegans...
Abnormal metabolism of glycogen phosphate as a cause for Lafora diseaseVincent S Tagliabracci
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA
J Biol Chem 283:33816-25. 2008..We propose that laforin functions to suppress excessive glycogen phosphorylation and is an essential component of the metabolism of normally structured glycogen...
Increased glycogen storage in yeast results in less branched glycogenWayne A Wilson
Department of Biochemistry and Molecular Biology, Center for Diabetes Research, Indiana University School of Medicine, Indianapolis, IN 46202, USA
Biochem Biophys Res Commun 320:416-23. 2004..Whenever glycogen storage was elevated, the polysaccharide formed was found to be less branched but normal branching could be restored by overexpression of branching enzyme...
A prevalent variant in PPP1R3A impairs glycogen synthesis and reduces muscle glycogen content in humans and miceDavid B Savage
Department of Clinical Biochemistry and Medicine, University of Cambridge, Cambridge, United Kingdom
PLoS Med 5:e27. 2008..However, the functional implications of the mutation were not known. The objective of this study was to characterise the molecular and physiological consequences of this genetic variant...
Biochemical characterization of Neurospora crassa glycogenin (GNN), the self-glucosylating initiator of glycogen synthesisRenato M de Paula
, UNESP, , R. Professor Francisco Degni, s/n, 14800-900 Araraquara, SP, Brazil
FEBS Lett 579:2208-14. 2005..While the entire GSN was required for full interaction, the C-terminus in GNN was more important. Furthermore, mutation in the GNN glucosylation sites did not impair the interaction with GSN...
Glycogen synthesis in the absence of glycogenin in the yeast Saccharomyces cerevisiaeMaría Jesús Torija
Centre Bioingenierie Gilbert Durand, UMR CNRS 5504, UMR INRA 792, Institut National des Sciences Appliquees, 31077 Toulouse Cedex 04, France
FEBS Lett 579:3999-4004. 2005....
Control of mammalian glycogen synthase by PAS kinaseWayne A Wilson
Department of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT 84132, USA
Proc Natl Acad Sci U S A 102:16596-601. 2005..This mode of regulation provides a mechanism for metabolic status to impinge directly on the cellular decision of whether to store or use available energy...
GNN is a self-glucosylating protein involved in the initiation step of glycogen biosynthesis in Neurospora crassaRenato Magalhães de Paula
Instituto de Quimica, UNESP, Departamento de Bioquímica e Tecnologia Química, 14800 900 Araraquara, SP, Brazil
Arch Biochem Biophys 435:112-24. 2005..Northern blot analysis showed that the gnn gene was induced during vegetative growth and was repressed upon carbon starvation...
Research Grants
- Glycogen Metabolism and Lafora DiseasePeter Roach; Fiscal Year: 2009..The research proposed in this application seeks to understand what is wrong with glycogen storage in Lafora disease, which could help provide clues to new treatment regimens. ..
- HORMONAL CONTROL OF GLYCOGEN METABOLISMPeter Roach; Fiscal Year: 2004..We will also attempt to assess in animal models the roles of phosphorylation and G6P activation of GS in controlling glycogen synthesis ..
- GLYCOGEN METABOLISM AND SIGNAL TRANSDUCTION IN YEASTPeter Roach; Fiscal Year: 2005..Yeast has proven to be a useful experimental system to study vesicular trafficking and such may be true for the study of autophagy and its relationship to glycogen metabolism (aim iii). ..
- Glycogen metabolism and its regulationPeter Roach; Fiscal Year: 2007..Its action could therefore profoundly affect glycogen metabolism. The goal of this aim is to establish whether UGPPase influences UDP-glucose and glycogen levels in vivo. ..
- RESEARCH TRAINING PROGRAM IN DIABETES AND OBESITYPeter Roach; Fiscal Year: 2007..abstract_text> ..
- Glycogen Metabolism and Lafora DiseasePeter J Roach; Fiscal Year: 2010..The research proposed in this application seeks to understand what is wrong with glycogen storage in Lafora disease, which could help provide clues to new treatment regimens. ..
- GLYCOGEN METABOLISM AND SIGNAL TRANSDUCTION IN YEASTPeter Roach; Fiscal Year: 1999..This study of yeast may help give a broader perspective on intracellular signaling that can be relevant to the control of cellular events such as growth, proliferation and metabolism, in mammalian systems. ..
- HORMONAL CONTROL OF GLYCOGEN METABOLISMPeter Roach; Fiscal Year: 1991..Success would significantly extend knowledge of the mechanisms of action of several hormones, notably insulin, of obvious relevance to better understanding of situations of impaired insulin control such as in diabetes...
- GLYCOGEN METABOLISM AND SIGNAL TRANSDUCTION IN YEASTPeter Roach; Fiscal Year: 1993..The research, though fundamental in nature, is relevant to situations of impaired hormonal control, such as in diabetes...
