- HAPPI: an online database of comprehensive human annotated and predicted protein interactionsJake Yue Chen
School of Informatics, Indiana University Purdue University, Indianapolis, IN, USA
BMC Genomics 10:S16. 2009..Ongoing collection and integration of human PPIs from different sources, both experimentally and computationally, can enable disease-specific network biology modelling in translational bioinformatics studies...
- ProteoLens: a visual analytic tool for multi-scale database-driven biological network data miningTianxiao Huan
School of Informatics, Indiana University Purdue University, Indianapolis, IN 46202, USA
BMC Bioinformatics 9:S5. 2008..A robust visual data analysis platform driven by database management systems to perform bi-directional data processing-to-visualizations with declarative querying capabilities is needed...
- Finding fractal patterns in molecular interaction networks: a case study in Alzheimer's diseaseXiaogang Wu
School of Informatics, Indiana University, Indianapolis, IN 46202, USA
Int J Comput Biol Drug Des 2:340-52. 2009..In this framework, the task of ranking nodes is represented as the problem of finding optimal density distributions of 'ant colonies' on all nodes of the network. Our results also revealed fractal-like properties of the network...