Dee R Denver

Summary

Affiliation: Indiana University
Country: USA

Publications

  1. pmc The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation
    Dee R Denver
    Department of Biology, Indiana University, Bloomington, Indiana 47405, USA
    Genetics 174:57-65. 2006
  2. ncbi Phylogenetics in Caenorhabditis elegans: an analysis of divergence and outcrossing
    Dee R Denver
    Division of Molecular Biology and Biochemistry, School of Biological Sciences, University of Missouri Kansas City, Kansas City, Missouri, USA
    Mol Biol Evol 20:393-400. 2003
  3. ncbi An evolutionary analysis of the helix-hairpin-helix superfamily of DNA repair glycosylases
    Dee R Denver
    Department of Biology, Indiana University, USA
    Mol Biol Evol 20:1603-11. 2003
  4. ncbi Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans
    Dee R Denver
    Department of Biology, Indiana University, 327 Jordan Hall, 1001 East Third Street, 47405, Bloomington, IN, USA
    J Mol Evol 58:584-95. 2004
  5. ncbi High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome
    Dee R Denver
    Department of Biology, Indiana University, Bloomington, Indiana 47405, USA
    Nature 430:679-82. 2004
  6. pmc Mutation rates, spectra and hotspots in mismatch repair-deficient Caenorhabditis elegans
    Dee R Denver
    Department of Biology, Indiana University, Bloomington, 47405, USA
    Genetics 170:107-13. 2005
  7. ncbi The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
    Dee R Denver
    Department of Biology, Indiana University, Bloomington, Indiana 47405, USA
    Nat Genet 37:544-8. 2005
  8. doi Fitness recovery and compensatory evolution in natural mutant lines of C. elegans
    Suzanne Estes
    Department of Biology, Portland State University, Portland, Oregon 97201, USA
    Evolution 65:2335-44. 2011
  9. pmc Natural variation in life history and aging phenotypes is associated with mitochondrial DNA deletion frequency in Caenorhabditis briggsae
    Suzanne Estes
    Department of Biology, Portland State University, Portland, OR 97201, USA
    BMC Evol Biol 11:11. 2011
  10. pmc Mutation accumulation in populations of varying size: the distribution of mutational effects for fitness correlates in Caenorhabditis elegans
    Suzanne Estes
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon 97403, USA
    Genetics 166:1269-79. 2004

Detail Information

Publications14

  1. pmc The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation
    Dee R Denver
    Department of Biology, Indiana University, Bloomington, Indiana 47405, USA
    Genetics 174:57-65. 2006
    ..elegans mutation accumulation and provides evidence for the presence of pathway-specific DNA repair territories in the C. elegans genome...
  2. ncbi Phylogenetics in Caenorhabditis elegans: an analysis of divergence and outcrossing
    Dee R Denver
    Division of Molecular Biology and Biochemistry, School of Biological Sciences, University of Missouri Kansas City, Kansas City, Missouri, USA
    Mol Biol Evol 20:393-400. 2003
    ..elegans strains is an infrequent event in the wild...
  3. ncbi An evolutionary analysis of the helix-hairpin-helix superfamily of DNA repair glycosylases
    Dee R Denver
    Department of Biology, Indiana University, USA
    Mol Biol Evol 20:1603-11. 2003
    ....
  4. ncbi Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans
    Dee R Denver
    Department of Biology, Indiana University, 327 Jordan Hall, 1001 East Third Street, 47405, Bloomington, IN, USA
    J Mol Evol 58:584-95. 2004
    ..This integrative approach yields a total nuclear genome-wide homopolymer mutation rate estimate of approximately 1.6 mutations per genome per generation...
  5. ncbi High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome
    Dee R Denver
    Department of Biology, Indiana University, Bloomington, Indiana 47405, USA
    Nature 430:679-82. 2004
    ....
  6. pmc Mutation rates, spectra and hotspots in mismatch repair-deficient Caenorhabditis elegans
    Dee R Denver
    Department of Biology, Indiana University, Bloomington, 47405, USA
    Genetics 170:107-13. 2005
    ..elegans MA lines. This, along with the apparent absence of a Saccharomyces cerevisiae MSH3 ortholog in the C. elegans genome, suggests that C. elegans MMR surveillance is carried out by a single Msh-2/Msh-6 heterodimer...
  7. ncbi The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
    Dee R Denver
    Department of Biology, Indiana University, Bloomington, Indiana 47405, USA
    Nat Genet 37:544-8. 2005
    ..elegans expressed sequences...
  8. doi Fitness recovery and compensatory evolution in natural mutant lines of C. elegans
    Suzanne Estes
    Department of Biology, Portland State University, Portland, Oregon 97201, USA
    Evolution 65:2335-44. 2011
    ....
  9. pmc Natural variation in life history and aging phenotypes is associated with mitochondrial DNA deletion frequency in Caenorhabditis briggsae
    Suzanne Estes
    Department of Biology, Portland State University, Portland, OR 97201, USA
    BMC Evol Biol 11:11. 2011
    ..The normal product of ND5 is a central component of the mitochondrial electron transport chain and integral to cellular energy metabolism...
  10. pmc Mutation accumulation in populations of varying size: the distribution of mutational effects for fitness correlates in Caenorhabditis elegans
    Suzanne Estes
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon 97403, USA
    Genetics 166:1269-79. 2004
    ....
  11. ncbi Mutation rate variation in multicellular eukaryotes: causes and consequences
    Charles F Baer
    Department of Zoology, University of Florida, Gainesville, Florida 32611, USA
    Nat Rev Genet 8:619-31. 2007
    ..Here we integrate several disparate lines of theoretical and empirical inquiry into a unified framework to guide future studies that are aimed at understanding why and how mutation rates evolve in multicellular species...
  12. ncbi High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11)
    Kevin L Vergin
    Department of Microbiology, Oregon State University, Corvallis, OR 97331, USA
    Environ Microbiol 9:2430-40. 2007
    ..The eukaryotic model of species sharing a common pool of alleles is more apt for this SAR11 population than a strictly clonal model of inheritance in which allelic diversity is controlled by periodic selection...
  13. pmc Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution
    Dana K Howe
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, 97331, USA
    BMC Evol Biol 8:62. 2008
    ..Evidence for Muller's Ratchet and knowledge on its underlying molecular mechanisms, however, are lacking for natural populations...
  14. pmc TileQC: a system for tile-based quality control of Solexa data
    Peter C Dolan
    Department of Zoology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA
    BMC Bioinformatics 9:250. 2008
    ..However, they also present novel analytical challenges that must be met for their effective application to biological questions...