Affiliation: IBM Research
- Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genesFrank A Feltus
Clemson University Genomics Institute, Clemson University, 51 New Cherry Street, Clemson, SC 29634, USA
BMC Genomics 12:379. 2011..Using the minimum tiling path as a guide, specific BAC clones representing the prioritized genomic interval are selected, pooled, and used to prepare a sequencing library...
- Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomesNiina Haiminen
IBM T J Watson Research Center, Yorktown Heights, NY 10598, USA
BMC Genomics 12:194. 2011..We propose additional measures enabling easy and visual comparison of assembly quality, such as rearrangements and redundant sequence content, relative to the known target sequence...
- Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the resultsNiina Haiminen
IBM Thomas J Watson Research Center, Yorktown Heights, New York, United States of America
PLoS ONE 6:e24182. 2011....
- iXora: exact haplotype inferencing and trait associationFilippo Utro
Computational Biology Center, IBM T J Watson Research, Yorktown Heights, NY, USA
BMC Genet 14:48. 2013..While methods for inferring parental haplotype assignments on large F1 populations exist in theory, these approaches do not work in practice at high levels of accuracy...