Research Topics
Genomes and Genes
| J YuanSummaryAffiliation: Harvard University Country: USA Publications
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Detail Information
Publications
A first insight into the molecular mechanisms of apoptosisJunying Yuan
Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA
Cell 116:S53-6, 1 p following S59. 2004
Apoptosis in the nervous systemJ Yuan
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
Nature 407:802-9. 2000..Elucidation of the cell death machinery in neurons promises to provide multiple points of therapeutic intervention in neurodegenerative diseases...
Distinct downstream pathways of caspase-11 in regulating apoptosis and cytokine maturation during septic shock responseS J Kang
Department of Cell Biology, Harvard Medical School, 240 Longwood Ave, Boston, MA 02115, USA
Cell Death Differ 9:1115-25. 2002..Furthermore, we show that caspase-11-mediated apoptosis under septic condition is Bid-independent. Our work suggests that the human homologue of caspase-11 may be an effective therapeutic target for treatment of septic shock...
Caspase-2 deficiency prevents programmed germ cell death resulting from cytokine insufficiency but not meiotic defects caused by loss of ataxia telangiectasia-mutated (Atm) gene functionY Morita
Vincent Center for Reproductive Biology, Department of Obstetrics and Gynecology, Massachusetts General Hospital Harvard Medical School, Boston, Massachusetts 02114, USA
Cell Death Differ 8:614-20. 2001..Thus, genetically distinct mechanisms exist for developmental deletion of oocytes via programmed cell death, one of which probably functions as a meiotic quality-control checkpoint that cannot be overridden...
Cross-talk between two cysteine protease families. Activation of caspase-12 by calpain in apoptosisT Nakagawa
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
J Cell Biol 150:887-94. 2000..These data suggest a novel apoptotic pathway involving calcium-mediated calpain activation and cross-talks between calpain and caspase families...
Caspase-12 compensates for lack of caspase-2 and caspase-3 in female germ cellsY Takai
Vincent Center for Reproductive Biology, Department of Obstetrics and Gynecology, Massachusetts General Hospital Harvard Medical School, Boston, Massachusetts 02114, USA
Apoptosis 12:791-800. 2007..However, when DNA damage is involved, and in the absence of caspase-2 and -3, caspase-12 becomes upregulated and mediates apoptosis in oocytes...
Caspase-12 mediates endoplasmic-reticulum-specific apoptosis and cytotoxicity by amyloid-betaT Nakagawa
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
Nature 403:98-103. 2000..Thus, caspase-12 mediates an ER-specific apoptosis pathway and may contribute to amyloid-beta neurotoxicity...
Defects in regulation of apoptosis in caspase-2-deficient miceL Bergeron
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
Genes Dev 12:1304-14. 1998..Thus, caspase-2 acts both as a positive and negative cell death effector, depending upon cell lineage and stage of development...
Caspase-dependent activation of cyclin-dependent kinases during Fas-induced apoptosis in Jurkat cellsB B Zhou
Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
Proc Natl Acad Sci U S A 95:6785-90. 1998..Our results do not support the idea that apoptosis is simply an aberrant mitosis but, instead, suggest that a subset of mitotic mechanisms plays an important role in apoptosis through elevated cdk activities...
Caspase-8 is required for cell death induced by expanded polyglutamine repeatsI Sanchez
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
Neuron 22:623-33. 1999..These results suggest an essential role of caspase-8 in HD-related neural degenerative diseases...
Cleavage of BID by caspase 8 mediates the mitochondrial damage in the Fas pathway of apoptosisH Li
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
Cell 94:491-501. 1998..Coexpression of BclxL inhibits all the apoptotic changes induced by tBID. Our results indicate that BID is a mediator of mitochondrial damage induced by Casp8...
Comparative evaluation of the antitumor activity of antiangiogenic proteins delivered by gene transferC J Kuo
Department of Genetics, Harvard Medical School, Division of Molecular Medicine, Children's Hospital, Boston, MA 02115, USA
Proc Natl Acad Sci U S A 98:4605-10. 2001....
The Caenorhabditis elegans cell death gene ced-4 encodes a novel protein and is expressed during the period of extensive programmed cell deathJ Yuan
Program in Neuroscience, Harvard Medical School, Boston, MA 02115
Development 116:309-20. 1992..The Ced-4 protein, as deduced from cDNA and genomic DNA clones, is 549 amino acids in length. Two regions of the putative Ced-4 protein product show some similarity to known calcium-binding domains...
Murine caspase-11, an ICE-interacting protease, is essential for the activation of ICES Wang
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
Cell 92:501-9. 1998..Our data suggest that caspase-11 is a component of ICE complex and is required for the activation of ICE...
Identification of small-molecule inhibitors of interaction between the BH3 domain and Bcl-xLA Degterev
Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA
Nat Cell Biol 3:173-82. 2001..Our results indicate that BH3-dependent heterodimerization is the key function of anti-apoptotic Bcl-2 family members and is required for the maintenance of cellular homeostasis...
Specific proteolysis of the kinase protein kinase C-related kinase 2 by caspase-3 during apoptosis. Identification by a novel, small pool expression cloning strategyV L Cryns
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
J Biol Chem 272:29449-53. 1997..Both of the major apoptotic cleavage sites of PRK2 in vivo lie within its regulatory domain, suggesting that its activity may be deregulated by proteolysis...
Essential requirement for caspase-8/FLICE in the initiation of the Fas-induced apoptotic cascadeP Juo
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
Curr Biol 8:1001-8. 1998..The intracellular domain of Fas interacts with several proteins including FADD (MORT-1), DAXX, RIP, FAF-1, FAP-1 and Sentrin. The adaptor protein FADD can, in turn, interact with the cysteine protease caspase-8 (FLICE/MACH/Mch5)...
Kinetics of placenta growth factor/vascular endothelial growth factor synergy in endothelial hydraulic conductivity and proliferationR O Dull
Edwin L. Steele Laboratory, Department of Radiation Oncology, Massachusetts General Hospital, Harvard Medical School, 100 Blossom Street, COX 7, Boston, Massachusetts 02114, USA
Microvasc Res 61:203-10. 2001..PlGF also potentiated the effect of VEGF on BAEC proliferation. Thus, augmentation of VEGF action by PlGF depends on the duration of PlGF exposure and on the origin of endothelial cells...
Wedelolactone suppresses LPS-induced caspase-11 expression by directly inhibiting the IKK complexM Kobori
Department of Cell Biology, Harvard Medical School, Boston, MA, USA
Cell Death Differ 11:123-30. 2004..We demonstrate that wedelolactone is an inhibitor of IKK, a kinase critical for activation of NF-kappaB by mediating phosphorylation and degradation of IkappaBalpha...
Expression of a dominant negative mutant of interleukin-1 beta converting enzyme in transgenic mice prevents neuronal cell death induced by trophic factor withdrawal and ischemic brain injuryR M Friedlander
Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Charlestown 02129, USA
J Exp Med 185:933-40. 1997..Our data suggest that genetic manipulation using ICE family dominant negative inhibitors can ameliorate the extent of ischemia-induced brain injury and preserve neurological function...
Inhibition of cell migration by PITENINs: the role of ARF6B Miao
Department of Biochemistry, Tufts University School of Medicine, Boston, MA 02111, USA
Oncogene 31:4317-32. 2012..Overall, our studies demonstrate the feasibility of developing specific small-molecule targeting PIP3 binding by PH domains as potential anticancer agents that can simultaneously interfere with cancer development at multiple points...
Inhibition of caspase-1 slows disease progression in a mouse model of Huntington's diseaseV O Ona
Department of Surgery, Brigham and Women s Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA
Nature 399:263-7. 1999..In addition, we demonstrate that intracerebroventricular administration of a caspase inhibitor delays disease progression and mortality in the mouse model of Huntington's disease...
The channel of deathA Degterev
Department of Cell Biology, Harvard Medical School, 240 Longwood Ave, Boston, MA 02115, USA
J Cell Biol 155:695-8. 2001....
The Peutz-Jegher gene product LKB1 is a mediator of p53-dependent cell deathP Karuman
Department of Cell Biology, Harvard Medical School, 02115, Boston, MA, USA
Mol Cell 7:1307-19. 2001..We propose that a deficiency in apoptosis is a key factor in the formation of multiple benign intestinal polyps in PJS patients, and possibly for the subsequent development of malignant tumors in these patients...
Processing and activation of pro-interleukin-16 by caspase-3Y Zhang
Pulmonary Center, Boston University School of Medicine, Boston, Massachusetts 02118, USA
J Biol Chem 273:1144-9. 1998..Pro-IL-16 is a substrate for caspase-3, and cleavage by this enzyme releases biologically active IL-16 from its inactive precursor...
Combination oral antiangiogenic therapy with thalidomide and sulindac inhibits tumour growth in rabbitsH M Verheul
Department of Surgery, Children s Hospital, Harvard Medical School, Boston, MA 02115, USA
Br J Cancer 79:114-8. 1999..When given together, the growth of the V2 carcinoma was inhibited by 75%. Our results indicated that oral antiangiogenic combination therapy with thalidomide and sulindac may be a useful non-toxic treatment for cancer...
A pharmacoproteomic approach implicates eukaryotic elongation factor 2 kinase in ER stress-induced cell deathM Boyce
Department of Cell Biology, Harvard Medical School, Boston, MA, USA
Cell Death Differ 15:589-99. 2008..Our work identifies eEF-2K as a new component of the ER stress response and underlines the utility of novel small molecules in discovering new cell biology...
Rapid ocular angiogenic control via naked DNA delivery to corneaS U Stechschulte
The Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA
Invest Ophthalmol Vis Sci 42:1975-9. 2001..The method described is safe, effective, titratable, and easily monitored. Naked DNA delivery to the cornea has the potential to alter the treatment of a wide variety of corneal and anterior segment diseases...
Caspases: an ancient cellular sword of DamoclesM Boyce
Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
Cell Death Differ 11:29-37. 2004..This review summarizes the current information on the mechanisms and functions of non-mammalian caspases and their relatives in apoptotic and nonapoptotic processes, and explores the possible evolutionary origin of the caspase family...
Activation of caspase-2 in apoptosisH Li
Cardiovascular Research Center, Massachusetts General Hospital East, Charlestown, Massachusetts 02129 and Department of Medicine, Harvard Medical School, Boston, Massachusetts 02115, USA
J Biol Chem 272:21010-7. 1997....
Sealing one's fate: control of cell death in neuronsL Bergeron
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
Curr Opin Neurobiol 8:55-63. 1998..In addition, recent evidence suggests that the components in the developmental programmed cell death pathway may play a critical role in neurodegenerative disorders...
Lateral view flow system for studies of cell adhesion and deformation under flow conditionsJ Yuan
Massachusetts General Hospital, Boston, MA, USA
Biotechniques 30:388-94. 2001..This novel lateral view flow system provides a powerful technique for visualizing and quantifying the morphological changes of cells in contact with substrates exposed to shear stress...
Expression cloning of protein targets for 3-phosphorylated phosphoinositidesV R Rao
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
J Biol Chem 274:37893-900. 1999..This report demonstrates the utility of this technique for isolating and characterizing 3'-PPI-binding proteins and has broad applicability for the isolation of binding domains for other lipid products...
Cellular response to endoplasmic reticulum stress: a matter of life or deathM Boyce
Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
Cell Death Differ 13:363-73. 2006..Here, we review what is known about the ESR in both yeast and mammals, and highlight recent findings on the mechanism and pathophysiological importance of ER stress-induced apoptosis...
A novel role for RIP1 kinase in mediating TNFα productionD E Christofferson
Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
Cell Death Dis 3:e320. 2012..These findings implicate cIAP1/2 and Traf2 as negative regulators of this RIP1 kinase-dependent TNFα production pathway and suggest a novel role for RIP1 kinase in mediating TNFα production under certain conditions...
The C. elegans cell death gene ced-3 encodes a protein similar to mammalian interleukin-1 beta-converting enzymeJ Yuan
Program of Neurosciences, Harvard Medical School, Boston, Massachusetts 02115
Cell 75:641-52. 1993..We propose that the CED-3 protein acts as a cysteine protease in the initiation of programmed cell death in C. elegans and that cysteine proteases also function in programmed cell death in mammals...
Caspases in apoptosis and beyondJ Li
Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
Oncogene 27:6194-206. 2008..Such knowledge is beginning to be translated into new therapies for the treatment of human diseases...
Inhibition of glycogen synthase kinase 3beta suppresses coxsackievirus-induced cytopathic effect and apoptosis via stabilization of beta-cateninJ Yuan
Department of Pathology and Laboratory Medicine, The James Hogg iCAPTURE Centre for Cardiovascular and Pulmonary Research, University of British Columbia - St. Paul's Hospital, Vancouver, British Columbia, Canada
Cell Death Differ 12:1097-106. 2005..Taken together, our results demonstrate that CVB3 infection stimulates GSK3beta activity via a tyrosine kinase-dependent mechanism, which contributes to CVB3-induced CPE and apoptosis through dysregulation of beta-catenin...
Inhibition of MD-1 expression by immunosuppressants or antisense oligodeoxynucleotides on skin allograft survival in miceX Zhang
Key Laboratory of Organ Transplantation, Ministry of Education, PR China
Transplant Proc 37:1965-7. 2005..MD-1 was theorized to play an important role in rejection promotion, although the precise relationship between it and allograft survival still remains ambiguous...
Solution structure of BID, an intracellular amplifier of apoptotic signalingJ J Chou
Committee on Higher Degrees in Biophysics, Harvard University, Cambridge, Massachusetts 02138, USA
Cell 96:615-24. 1999..Additionally, we show that the overall structure of BID is preserved after cleavage by Caspase 8. We propose that BID has both BH3 domain-dependent and -independent modes of action in inducing mitochondrial damage...
ASH2L: alternative splicing and downregulation during induced megakaryocytic differentiation of multipotential leukemia cell linesJ Wang
Department of Biochemistry, Institute of Basic Medical Sciences, 5 Dong Dan San Tiao, Beijing, 100005, P R China
J Mol Med (Berl) 79:399-405. 2001..These results suggest that ASH2L plays a role in hematopoiesis and is associated with some special kinds of leukemia...
Notch1 induces cell cycle arrest and apoptosis in human cervical cancer cells: involvement of nuclear factor kappa B inhibitionJ Yao
Institute of Virology, School of Medicine, Wuhan University, Wuhan, Hubei, People s Republic of China
Int J Gynecol Cancer 17:502-10. 2007..Overall, our results suggest that NF-kappaB inhibition may contribute partially to cell cycle arrest and apoptosis induced by Notch1 activation in human cervical cancer cells...
Adhesion induced expression of the serine/threonine kinase Fnk in human macrophagesU Holtrich
Department of Obstetrics and Gynecology, J W Goethe University, Frankfurt, Germany
Oncogene 19:4832-9. 2000..Moreover, both proteins were shown to co-localize in mammalian cells. The homology of Cib with calmodulin and with calcineurin B suggests that Cib might be a regulatory subunit of polo-like kinases...
Ich-1, an Ice/ced-3-related gene, encodes both positive and negative regulators of programmed cell deathL Wang
Cardiovascular Research Center, Massachusetts General Hospital East Charlestown 02129
Cell 78:739-50. 1994..These observations suggest that Ich-1 plays an important role in both positive and negative regulation of programmed cell death in vertebrate animals...
Association of transcription factor APRF and protein kinase Jak1 with the interleukin-6 signal transducer gp130C Lutticken
Institute for Biochemistry, RWTH Aachen, Germany
Science 263:89-92. 1994..These data indicate that Jak family protein kinases may participate in IL-6 signaling and that APRF may be activated in a complex with gp130...
Caspase-11 mediates oligodendrocyte cell death and pathogenesis of autoimmune-mediated demyelinationS Hisahara
Division of Neuroanatomy, Department of Neuroscience, Osaka University Graduate School of Medicine, Osaka 565 0871, Japan
J Exp Med 193:111-22. 2001..Our findings suggest that OLG death is mediated by a pathway that involves caspases-11 and -3 and leads to the demyelination observed in EAE...
Inactivation of farnesyltransferase and geranylgeranyltransferase I by caspase-3: cleavage of the common alpha subunit during apoptosisK W Kim
Department of Life Science, Kwangju Institute of Science and Technology, Puk Gu, Kwangju 500 712, Korea
Oncogene 20:358-66. 2001..Taken together, we suggest that cleavage of prenyltransferase by caspase contributes to the progression of apoptosis...
Overexpression of the transmembrane tyrosine phosphatase LAR activates the caspase pathway and induces apoptosisL P Weng
Pulmonary Center Department of Medicine Department of Biochemistry Boston University Medical Center Boston, Massachusetts 02118, USA
Curr Biol 8:247-56. 1998..This study investigates the potential role of LAR in the regulation of cell growth and death in mammals...
Characterization of the avian Ich-1 cDNA and expression of Ich-1L mRNA in the hen ovaryA L Johnson
Department of Biological Sciences, The University of Notre Dame, IN 46556, USA
Gene 192:227-33. 1997..The deduced amino acid (aa) sequence of ICH-1L is 70.8% identical to human ICH-1L and contains the conserved QACRG peptide active catalytic sequence characteristic of many ICE-related family of cysteine proteases...
The C. elegans MDL-1 and MXL-1 proteins can functionally substitute for vertebrate MAD and MAXJ Yuan
Department of Molecular Biology, Princeton University, New Jersey 08544 1014, USA
Oncogene 17:1109-18. 1998..Like the vertebrate MAD protein, MDL-1 activity in suppressing transformation is dependent on a functional SIN3 interaction domain...
[An experimental study on the release of endotoxin from gram negative bacteria induced by antibiotics]N Xu
Institute of Burn Research, Southwestern Hospital Third Military Medical vniversity, Chongqing 400038, P.R. China
Zhonghua Shao Shang Za Zhi 17:75-9. 2001..Antibiotics with less ability of inducing LPS release were recommended for clinical management of the sepsis and/or septic shock caused by Gram negative bacteria...
[The effect of Lipopolysacharide (LPS) on morphology and function of human umbilical endothelial cells (HUVECs)]J Cheng
Institute of Burn Research, Southwestern Hospital, The Third Military Medical University, Chongqing 400038 P, China
Zhonghua Shao Shang Za Zhi 17:155-8. 2001..As a result, LPS might play important roles in the increase of vascular permeability, the promotion of leukocytic adherence, and the initiation of inflammatory cascade reaction...
Human ICE/CED-3 protease nomenclatureE S Alnemri
Cell 87:171. 1996
Identification and characterization of Ich-3, a member of the interleukin-1beta converting enzyme (ICE)/Ced-3 family and an upstream regulator of ICES Wang
Cardiovascular Research Center, Massachusetts General Hospital East, Charlestown, Massachusetts 02129, USA
J Biol Chem 271:20580-7. 1996..Ich-3 does not process proIL-1beta directly but does promote proIL-1beta processing by ICE. These results suggest that Ich-3 may play a very important role in apoptosis and inflammatory responses and may be an upstream regulator of ICE...
Tolerization of dendritic cells by T(S) cells: the crucial role of inhibitory receptors ILT3 and ILT4C C Chang
Department of Pathology, Columbia University, New York, NY 10032, USA
Nat Immunol 3:237-43. 2002..These findings demonstrate an important mechanism of immune regulation...
