Daniel Schwartz

Summary

Affiliation: Harvard University
Country: USA

Publications

  1. ncbi Predicting protein post-translational modifications using meta-analysis of proteome scale data sets
    Daniel Schwartz
    Department of Genetics, Harvard Medical School, Boston, MA 02115, USA
    Mol Cell Proteomics 8:365-79. 2009
  2. ncbi Using the scan-x Web site to predict protein post-translational modifications
    Michael F Chou
    Department of Genetics, Harvard Medical School, Boston, Massachusetts, USA
    Curr Protoc Bioinformatics . 2011
  3. ncbi Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases
    Sladjana Prisic
    Division of Infectious Diseases, Children s Hospital Boston, Harvard Medical School, Boston, MA 02115, USA
    Proc Natl Acad Sci U S A 107:7521-6. 2010
  4. ncbi Biological sequence motif discovery using motif-x
    Michael F Chou
    Department of Genetics, Harvard Medical School, Boston, Massachusetts, USA
    Curr Protoc Bioinformatics . 2011
  5. ncbi Using bacteria to determine protein kinase specificity and predict target substrates
    Michael F Chou
    Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America
    PLoS ONE 7:e52747. 2012
  6. ncbi Collection and motif-based prediction of phosphorylation sites in human viruses
    Daniel Schwartz
    Department of Genetics, Harvard Medical School, Boston, MA 02115, USA
    Sci Signal 3:rs2. 2010
  7. ncbi An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
    Daniel Schwartz
    Department of Cell Biology, 240 Longwood Ave, Harvard Medical School, Boston, Massachusetts 02115, USA
    Nat Biotechnol 23:1391-8. 2005
  8. ncbi Identification of 14-3-3epsilon substrates from embryonic murine brain
    Bryan A Ballif
    Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA
    J Proteome Res 5:2372-9. 2006
  9. ncbi Ultraconserved elements: analyses of dosage sensitivity, motifs and boundaries
    Charleston W K Chiang
    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA
    Genetics 180:2277-93. 2008
  10. ncbi Phosphoproteomic analysis of the developing mouse brain
    Bryan A Ballif
    Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
    Mol Cell Proteomics 3:1093-101. 2004

Collaborators

Detail Information

Publications10

  1. ncbi Predicting protein post-translational modifications using meta-analysis of proteome scale data sets
    Daniel Schwartz
    Department of Genetics, Harvard Medical School, Boston, MA 02115, USA
    Mol Cell Proteomics 8:365-79. 2009
    ..New motif discovery is a byproduct of this approach, and the phosphorylation motif analyses provide strong evidence of evolutionary conservation of both known and novel kinase motifs...
  2. ncbi Using the scan-x Web site to predict protein post-translational modifications
    Michael F Chou
    Department of Genetics, Harvard Medical School, Boston, Massachusetts, USA
    Curr Protoc Bioinformatics . 2011
    ..This tool is accessible from virtually any computer with a Web browser. The only requirement is a means of searching for a protein of interest in one of the represented organisms...
  3. ncbi Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases
    Sladjana Prisic
    Division of Infectious Diseases, Children s Hospital Boston, Harvard Medical School, Boston, MA 02115, USA
    Proc Natl Acad Sci U S A 107:7521-6. 2010
    ..tuberculosis and create a resource for understanding how specific phosphorylation events modulate protein activity. The results further provide the potential to predict likely cognate STPKs for newly identified phosphoproteins...
  4. ncbi Biological sequence motif discovery using motif-x
    Michael F Chou
    Department of Genetics, Harvard Medical School, Boston, Massachusetts, USA
    Curr Protoc Bioinformatics . 2011
    ..The protocols presented demonstrate the use of motif-x in three common user scenarios...
  5. ncbi Using bacteria to determine protein kinase specificity and predict target substrates
    Michael F Chou
    Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America
    PLoS ONE 7:e52747. 2012
    ....
  6. ncbi Collection and motif-based prediction of phosphorylation sites in human viruses
    Daniel Schwartz
    Department of Genetics, Harvard Medical School, Boston, MA 02115, USA
    Sci Signal 3:rs2. 2010
    ....
  7. ncbi An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
    Daniel Schwartz
    Department of Cell Biology, 240 Longwood Ave, Harvard Medical School, Boston, Massachusetts 02115, USA
    Nat Biotechnol 23:1391-8. 2005
    ....
  8. ncbi Identification of 14-3-3epsilon substrates from embryonic murine brain
    Bryan A Ballif
    Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA
    J Proteome Res 5:2372-9. 2006
    ..Phosphorylation of the deubiquitinating enzyme USP8 at serine 680 was found essential for its interaction with 14-3-3epsilon and for maintaining USP8 in the cytosol...
  9. ncbi Ultraconserved elements: analyses of dosage sensitivity, motifs and boundaries
    Charleston W K Chiang
    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA
    Genetics 180:2277-93. 2008
    ....
  10. ncbi Phosphoproteomic analysis of the developing mouse brain
    Bryan A Ballif
    Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA
    Mol Cell Proteomics 3:1093-101. 2004
    ....