Winston Patrick Kuo

Summary

Affiliation: Harvard University
Country: USA

Publications

  1. pmc Microarray profiling reveals the integrated stress response is activated by halofuginone in mammary epithelial cells
    Yana G Kamberov
    Genetics Department, Harvard Medical School, Boston, MA, USA
    BMC Res Notes 4:381. 2011
  2. pmc A potential role for intragenic miRNAs on their hosts' interactome
    Ludwig Christian G Hinske
    Department of Anaesthesiology, Clinic of the University of Munich, Munich, Germany
    BMC Genomics 11:533. 2010
  3. pmc Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates
    Fang Liu
    Department of Tumor Biology, Rikshopitalet Radiumhospitalet Medical Center, Montebello, Oslo, Norway
    BMC Genomics 8:153. 2007
  4. pmc Validation of oligoarrays for quantitative exploration of the transcriptome
    Vigdis Nygaard
    Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Montebello, Oslo, Norway
    BMC Genomics 9:258. 2008
  5. ncbi request reprint A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
    Winston Patrick Kuo
    Department of Developmental Biology, Harvard School of Dental Medicine, 188 Longwood Ave, Boston, Massachusetts 02115, USA
    Nat Biotechnol 24:832-40. 2006
  6. ncbi request reprint A primer on gene expression and microarrays for machine learning researchers
    Winston Patrick Kuo
    Decision Systems Group, Brigham and Women s Hospital, Harvard Medical School, Boston, MA, USA
    J Biomed Inform 37:293-303. 2004
  7. ncbi request reprint Deciphering gene expression profiles generated from DNA microarrays and their applications in oral medicine
    Winston Patrick Kuo
    Department of Oral Medicine, Infection, and Immunity, Harvard School of Dental Medicine, Cambridge, MA 02115, USA
    Oral Surg Oral Med Oral Pathol Oral Radiol Endod 97:584-91. 2004
  8. ncbi request reprint Overview of bioinformatics and its application to oral genomics
    W P Kuo
    Harvard School of Dental Medicine, Department of Oral Medicine, Infection, and Immunity, 188 Longwood Avenue, Boston, MA 02115, USA
    Adv Dent Res 17:89-94. 2003
  9. ncbi request reprint Microarrays and clinical dentistry
    Winston Patrick Kuo
    Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, Mass 02115, USA
    J Am Dent Assoc 134:456-62. 2003
  10. ncbi request reprint Gene expression profiling by DNA microarrays and its application to dental research
    Winston Patrick Kuo
    Department of Oral Medicine and Diagnostic Sciences, Harvard School of Dental Medicine, 188 Longwood Avenue, Boston, MA 02115, USA
    Oral Oncol 38:650-6. 2002

Collaborators

Detail Information

Publications15

  1. pmc Microarray profiling reveals the integrated stress response is activated by halofuginone in mammary epithelial cells
    Yana G Kamberov
    Genetics Department, Harvard Medical School, Boston, MA, USA
    BMC Res Notes 4:381. 2011
    ..abstract:..
  2. pmc A potential role for intragenic miRNAs on their hosts' interactome
    Ludwig Christian G Hinske
    Department of Anaesthesiology, Clinic of the University of Munich, Munich, Germany
    BMC Genomics 11:533. 2010
    ....
  3. pmc Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates
    Fang Liu
    Department of Tumor Biology, Rikshopitalet Radiumhospitalet Medical Center, Montebello, Oslo, Norway
    BMC Genomics 8:153. 2007
    ..As part of an ongoing large-scale cross-platform data comparison framework, we report here a comparison based on identical samples between one-dye DNA microarray platforms and MPSS (Massively Parallel Signature Sequencing)...
  4. pmc Validation of oligoarrays for quantitative exploration of the transcriptome
    Vigdis Nygaard
    Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Montebello, Oslo, Norway
    BMC Genomics 9:258. 2008
    ..105. Our aim was to investigate whether the less resource demanding and more widespread oligoarray technique could provide data that were correlated to and had the same absolute scale as those obtained with MPSS and SAGE...
  5. ncbi request reprint A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
    Winston Patrick Kuo
    Department of Developmental Biology, Harvard School of Dental Medicine, 188 Longwood Ave, Boston, Massachusetts 02115, USA
    Nat Biotechnol 24:832-40. 2006
    ..We demonstrate that, after stringent preprocessing, commercial arrays were more consistent than in-house arrays, and by most measures, one-dye platforms were more consistent than two-dye platforms...
  6. ncbi request reprint A primer on gene expression and microarrays for machine learning researchers
    Winston Patrick Kuo
    Decision Systems Group, Brigham and Women s Hospital, Harvard Medical School, Boston, MA, USA
    J Biomed Inform 37:293-303. 2004
    ..The goal of this article is to familiarize machine learning researchers with data originated from gene expression microarrays...
  7. ncbi request reprint Deciphering gene expression profiles generated from DNA microarrays and their applications in oral medicine
    Winston Patrick Kuo
    Department of Oral Medicine, Infection, and Immunity, Harvard School of Dental Medicine, Cambridge, MA 02115, USA
    Oral Surg Oral Med Oral Pathol Oral Radiol Endod 97:584-91. 2004
    ....
  8. ncbi request reprint Overview of bioinformatics and its application to oral genomics
    W P Kuo
    Harvard School of Dental Medicine, Department of Oral Medicine, Infection, and Immunity, 188 Longwood Avenue, Boston, MA 02115, USA
    Adv Dent Res 17:89-94. 2003
    ..This manuscript reviews the two most commonly used microarray technologies, basic microarray data analysis, and the results from several ongoing oral cancer genomic studies...
  9. ncbi request reprint Microarrays and clinical dentistry
    Winston Patrick Kuo
    Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, Mass 02115, USA
    J Am Dent Assoc 134:456-62. 2003
    ....
  10. ncbi request reprint Gene expression profiling by DNA microarrays and its application to dental research
    Winston Patrick Kuo
    Department of Oral Medicine and Diagnostic Sciences, Harvard School of Dental Medicine, 188 Longwood Avenue, Boston, MA 02115, USA
    Oral Oncol 38:650-6. 2002
    ..The technology permits the simultaneous analysis of tens of thousands of genes for the purposes of gene discovery, disease diagnosis. improved drug development, and therapeutics tailored to specific disease processes...
  11. ncbi request reprint Analysis of matched mRNA measurements from two different microarray technologies
    Winston Patrick Kuo
    Children s Hospital Informatics Program and Division of Endocrinology, Department of Medicine, Children s Hospital, Brigham and Women s Hospital, Harvard Medical School, Boston, MA 02115, USA
    Bioinformatics 18:405-12. 2002
    ..Cross-platform utilization of data from different technologies has the potential to reduce the need to duplicate experiments but requires corresponding measurements to be comparable...
  12. ncbi request reprint Classification and identification of genes associated with oral cancer based on gene expression profiles. A preliminary study
    Winston Patrick Kuo
    N Y State Dent J 69:23-6. 2003
    ..We found 651 genes to be associated with cancer. This article describes a preliminary study of current developments from the Human Genome Project (HGP) and its application to OSCC...
  13. pmc Peripheral arterial occlusive disease: global gene expression analyses suggest a major role for immune and inflammatory responses
    Shijun Fu
    Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences and Shanghai Jiao Tong University School of Medicine, Shanghai, PR China
    BMC Genomics 9:369. 2008
    ..However, mechanisms underlying the genesis and progression of the disease are far from clear. Genome-wide gene expression profiling of clinical samples may represent an effective approach to gain relevant information...
  14. ncbi request reprint DNA microarrays in otolaryngology-head and neck surgery
    Mark Eliot Whipple
    Department of Otolaryngology Head and Neck Surgery, University of Washington School of Medicine, Seattle 98195 6515, USA
    Otolaryngol Head Neck Surg 127:196-204. 2002
    ..Our goal was to review the technologies underlying DNA microarrays and to explore their use in otolaryngology-head and neck surgery...
  15. pmc Angiogenic heterogeneity in head and neck squamous cell carcinoma: biological and therapeutic implications
    Rifat Hasina
    Department of Pathology, Medicine and Radiation and Cellular Oncology, The University of Chicago, Chicago, IL, USA
    Lab Invest 88:342-53. 2008
    ..Finally, they suggest that studies in conjunction with the ongoing clinical trials that explore the correlation between target expression and clinical outcome are warranted...