Atul Butte

Summary

Affiliation: Harvard University
Country: USA

Publications

  1. pmc Reproducibility of gene expression across generations of Affymetrix microarrays
    Ashish Nimgaonkar
    Informatics Program, Children s Hospital, Harvard Medical School, Boston, MA, USA
    BMC Bioinformatics 4:27. 2003
  2. pmc Quantifying the relationship between co-expression, co-regulation and gene function
    Dominic J Allocco
    Informatics Program, Children s Hospital, Boston, MA, USA
    BMC Bioinformatics 5:18. 2004
  3. pmc Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
    A J Butte
    Children s Hospital Informatics Program and Division of Endocrinology, Department of Medicine, Children s Hospital, 300 Longwood Avenue, Boston, MA 02115, USA
    Proc Natl Acad Sci U S A 97:12182-6. 2000
  4. ncbi request reprint Comparing the similarity of time-series gene expression using signal processing metrics
    A J Butte
    Children s Hospital Informatics Program, 300 Longwood Avenue, Boston, Massachusetts 02115, USA
    J Biomed Inform 34:396-405. 2001
  5. ncbi request reprint The use and analysis of microarray data
    Atul Butte
    Children s Hospital Informatics Program and Division of Endocrinology, Children s Hospital, 300 Longwood Avenue, Boston, Massachusetts 02115, USA
    Nat Rev Drug Discov 1:951-60. 2002
  6. ncbi request reprint Strict interpretation of vaccination guidelines with computerized algorithms and improper timing of administered doses
    A J Butte
    Division of Endocrinology, Children s Hospital, Boston, MA 02115, USA
    Pediatr Infect Dis J 20:561-5. 2001
  7. pmc Data-driven methods to discover molecular determinants of serious adverse drug events
    A P Chiang
    Department of Medicine, Stanford Center for Biomedical Informatics, Stanford University School of Medicine, Stanford, California, USA
    Clin Pharmacol Ther 85:259-68. 2009

Collaborators

  • I S Kohane
  • T R Golub
  • A P Chiang
  • Dominic J Allocco
  • Ashish Nimgaonkar
  • Alan H Beggs
  • Louis M Kunkel
  • Despina Sanoudou
  • Judith N Haslett

Detail Information

Publications7

  1. pmc Reproducibility of gene expression across generations of Affymetrix microarrays
    Ashish Nimgaonkar
    Informatics Program, Children s Hospital, Harvard Medical School, Boston, MA, USA
    BMC Bioinformatics 4:27. 2003
    ..In this study the reproducibility of gene expression levels across two generations of Affymetrix GeneChips (HuGeneFL and HG-U95A) was measured...
  2. pmc Quantifying the relationship between co-expression, co-regulation and gene function
    Dominic J Allocco
    Informatics Program, Children s Hospital, Boston, MA, USA
    BMC Bioinformatics 5:18. 2004
    ....
  3. pmc Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
    A J Butte
    Children s Hospital Informatics Program and Division of Endocrinology, Department of Medicine, Children s Hospital, 300 Longwood Avenue, Boston, MA 02115, USA
    Proc Natl Acad Sci U S A 97:12182-6. 2000
    ..We discuss the advantages of this methodology over alternative approaches, such as phylogenetic-type tree clustering and self-organizing maps...
  4. ncbi request reprint Comparing the similarity of time-series gene expression using signal processing metrics
    A J Butte
    Children s Hospital Informatics Program, 300 Longwood Avenue, Boston, Massachusetts 02115, USA
    J Biomed Inform 34:396-405. 2001
    ..Two of these were known in the biomedical literature and may have been missed using correlation coefficients. Digital signal processing tools can be embedded and enhance existing clustering algorithms...
  5. ncbi request reprint The use and analysis of microarray data
    Atul Butte
    Children s Hospital Informatics Program and Division of Endocrinology, Children s Hospital, 300 Longwood Avenue, Boston, Massachusetts 02115, USA
    Nat Rev Drug Discov 1:951-60. 2002
    ..This article reviews the different ways to analyse large sets of microarray data, including the questions that can be asked and the challenges in interpreting the measurements...
  6. ncbi request reprint Strict interpretation of vaccination guidelines with computerized algorithms and improper timing of administered doses
    A J Butte
    Division of Endocrinology, Children s Hospital, Boston, MA 02115, USA
    Pediatr Infect Dis J 20:561-5. 2001
    ..Frequently changing immunization recommendations may lead to incorrectly administered doses...
  7. pmc Data-driven methods to discover molecular determinants of serious adverse drug events
    A P Chiang
    Department of Medicine, Stanford Center for Biomedical Informatics, Stanford University School of Medicine, Stanford, California, USA
    Clin Pharmacol Ther 85:259-68. 2009
    ..We also describe recent examples of how bioinformatics methods coupled with data repositories can advance the science of SADRs...