Ahsan Huda

Summary

Affiliation: Georgia Institute of Technology
Country: USA

Publications

  1. ncbi Epigenetic regulation of Mammalian genomes by transposable elements
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, Georgia 30306, USA
    Ann N Y Acad Sci 1178:276-84. 2009
  2. ncbi Endogenous retroviruses of the chicken genome
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, GA, USA
    Biol Direct 3:9. 2008
  3. ncbi Epigenetic regulation of transposable element derived human gene promoters
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332, USA
    Gene 475:39-48. 2011
  4. ncbi Prediction of transposable element derived enhancers using chromatin modification profiles
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, Georgia, United States of America
    PLoS ONE 6:e27513. 2011
  5. ncbi Effect of the transposable element environment of human genes on gene length and expression
    Daudi Jjingo
    School of Biology, Georgia Institute of Technology, GA, USA
    Genome Biol Evol 3:259-71. 2011
  6. ncbi Analysis of transposable element sequences using CENSOR and RepeatMasker
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, GA, USA
    Methods Mol Biol 537:323-36. 2009
  7. ncbi A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags
    Jianrong Wang
    School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA
    Bioinformatics 26:2501-8. 2010
  8. ncbi Epigenetic histone modifications of human transposable elements: genome defense versus exaptation
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332, USA
    Mob DNA 1:2. 2010
  9. ncbi Repetitive DNA elements, nucleosome binding and human gene expression
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA
    Gene 436:12-22. 2009

Detail Information

Publications9

  1. ncbi Epigenetic regulation of Mammalian genomes by transposable elements
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, Georgia 30306, USA
    Ann N Y Acad Sci 1178:276-84. 2009
    ..It is hoped that these proposed scenarios may help to serve as a roadmap for future investigations into the epigenetic regulatory effects of mammalian TEs...
  2. ncbi Endogenous retroviruses of the chicken genome
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, GA, USA
    Biol Direct 3:9. 2008
    ..The abundance and diversity of chicken ERVs we discovered underscore the utility of an approach that combines multiple methods for the identification of interspersed repeats in vertebrate genomes...
  3. ncbi Epigenetic regulation of transposable element derived human gene promoters
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332, USA
    Gene 475:39-48. 2011
    ....
  4. ncbi Prediction of transposable element derived enhancers using chromatin modification profiles
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, Georgia, United States of America
    PLoS ONE 6:e27513. 2011
    ....
  5. ncbi Effect of the transposable element environment of human genes on gene length and expression
    Daudi Jjingo
    School of Biology, Georgia Institute of Technology, GA, USA
    Genome Biol Evol 3:259-71. 2011
    ..Our results confirm the overall relevance of the TE environment to gene expression and point to distinct mechanisms by which different TE families may contribute to gene regulation...
  6. ncbi Analysis of transposable element sequences using CENSOR and RepeatMasker
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, GA, USA
    Methods Mol Biol 537:323-36. 2009
    ..We briefly consider the strengths and weaknesses of these different classes of methods with an emphasis on their complementary utility for the analysis of repetitive DNA in eukaryotes...
  7. ncbi A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags
    Jianrong Wang
    School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA
    Bioinformatics 26:2501-8. 2010
    ..Such ambiguous tags are typically eliminated from consideration resulting in a potential loss of important biological information...
  8. ncbi Epigenetic histone modifications of human transposable elements: genome defense versus exaptation
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, 310 Ferst Drive, Atlanta, GA 30332, USA
    Mob DNA 1:2. 2010
    ..To date, all available evidence points to the genome defense hypothesis as the best explanation for the biological role of TE epigenetic modifications...
  9. ncbi Repetitive DNA elements, nucleosome binding and human gene expression
    Ahsan Huda
    School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA
    Gene 436:12-22. 2009
    ..These observations indicate that repetitive DNA elements mediate chromatin accessibility in proximal promoter regions and the repeat content of promoters is relevant to both gene expression and function...